Ivanov AG, Rosso D, Savitch LV, Stachula P, Rosembert M, Oquist G, Hurry V, Hüner NP
Implications of alternative electron sinks in increased resistance of PSII and PSI photochemistry to high light stress in cold-acclimated Arabidopsis thaliana.
Photosynth Res. 2012 Sep;113(1-3):191-206

Fuentes S, Ljung K, Sorefan K, Alvey E, Harberd NP, Ostergaard L
Fruit Growth in Arabidopsis Occurs via DELLA-Dependent and DELLA-Independent Gibberellin Responses
Plant Cell. 2012 Oct;24(10):3982-96

Miranda H, Cheregi O, Netotea S, Hvidsten TR, Moritz T, Funk C
Co-expression analysis, proteomic and metabolomic study on the impact of a Deg/HtrA protease triple mutant in Synechocystis sp. PCC 6803 exposed to temperature and high light stress
J. of Proteomics 2013, 78:94-311

Cheregi O, Vermaas W, Funk C
The search for new chlorophyll-binding proteins in the cyanobacterium Synechocystis sp. PCC 6803
J Biotechnol. 2012 Jul 1. [Epub ahead of print]

Isabel N, M Lamothe, SL Thompson
A second-generation diagnostic single nucleotide polymorphism (SNP)-based assay, optimized to distinguish among eight poplar (Populus L.) species and their early hybrids
Tree Genetics & Genomes 2012 October

Klintenäs M, Pin PA, Benlloch R, Ingvarsson PK, Nilsson O
Analysis of conifer FLOWERING LOCUS T/TERMINAL FLOWER1-like genes provides evidence for dramatic biochemical evolution in the angiosperm FT lineage
New Phytol. 2012, 196(4):1260-1273

Roberts IN, Lam XT, Miranda H, Kieselbach T, Funk C
Degradation of PsbO by the Deg Protease HhoA Is Thioredoxin Dependent
PLoS One. 2012;7(9):e45713 Epub Sep 19

Ohman D, Demedts B, Kumar M, Gerber L, Gorzsás A, Goeminne G, Hedenström M, Ellis B, Boerjan W, Sundberg B
MYB103 is required for FERULATE-5-HYDROXYLASE expression and syringyl lignin biosynthesis in Arabidopsis stems
Plant J. 2012 Sep 12. [Epub ahead of print]

Takata N, Eriksson ME
A simple and efficient transient transformation for hybrid aspen (Populus tremula × P. tremuloides)
Plant Methods 2012, 8:30

Cruz-Ramírez A, Díaz-Triviño S, Blilou I, Grieneisen VA, Sozzani R, Zamioudis C, Miskolczi P, Nieuwland J, Benjamins R, Dhonukshe P, Caballero-Pérez J, Horvath B, Long Y, Mähönen AP, Zhang H, Xu J, Murray JA, Benfey PN, Bako L, Marée AF, Scheres B
A bistable circuit involving SCARECROW-RETINOBLASTOMA integrates cues to inform asymmetric stem cell division
Cell 2012; 150(5):1002-1015

Sahlin K, Street N, Lundeberg J, Arvestad L
Improved gap size estimation for scaffolding algorithms
Bioinformatics. 2012 Sep 1;28(17):2215-22

Zang H, Moritz T, Norstedt G, Hirschberg AL, Tollet-Egnell P
Effects of oestrogen and testosterone therapy on serum metabolites in postmenopausal women
Clin Endocrinol (Oxf). 2012 77(2):288-95

Surowiec I, Nowik W, Moritz T
Mass spectrometric identification of new minor indigoids in shellfish purple dye from Hexaplex trunculus
DYES AND PIGMENTS 2012 94(2):363-369

Li X, Wu HX, Southerton SG
Identification of putative candidate genes for juvenile wood density in Pinus radiata
Tree Physiol. 2012; 32(8):1046-57

Suorsa M, Järvi S, Grieco M, Nurmi M, Pietrzykowska M, Rantala M, Kangasjärvi S, Paakkarinen V, Tikkanen M, Jansson S, Aro EM
PROTON GRADIENT REGULATION5 Is Essential for Proper Acclimation of Arabidopsis Photosystem I to Naturally and Artificially Fluctuating Light Conditions.
Plant Cell. 2012 24(7):2934-2948

Madsen R, Rantapää-Dahlqvist S, Lundstedt T, Moritz T, Trygg J
Metabolic responses to change in disease activity during tumor necrosis factor inhibition in patients with rheumatoid arthritis
J Proteome Res. 2012 11(7):3796-804

Novák O, Hényková E, Sairanen I, Kowalczyk M, Pospíšil T, Ljung K
Tissue specific profiling of the Arabidopsis thaliana auxin metabolome
Plant J. 2012 72(3):523-536

Gutierrez L, Mongelard G, Flokovác K, Păcurard DI, Nováka O, Staswick P, Kowalczyk M, Păcurar M, Demailly H, Geiss G, Bellini C
Auxin Controls Arabidopsis Adventitious Root Initiation by Regulating Jasmonic Acid Homeostasis
The Plant Cell June 2012 24(6): 2515-2527

Shaikhali J, Barajas-Lopéz J, Ötvös K, Kremnev D, Sánchez Garcia A, Srivastava V, Wingsle G, Bako L, Strand Å
The CRYPTOCHROME1-dependent response to excess light is mediated through the transcriptional activators ZINC FINGER PROTEIN EXPRESSED IN INFLORESCENCE MERISTEM LIKE1 and 2 in Arabidopsis
Plant Cell, 2012, 24(7):3009-25

Barajas-López J, Blanco NE, Strand A
Plastid-to-nucleus communication, signals controlling the running of the plant cell
BBA-Molecular Cell Research 2013, 1833(2):425-37

Shaikhali J, Noren L, Barajas-Lopez JD, Srivastava V, Konig J, Sauer UH, Wingsle G, Dietz KJ, Strand A
Redox-mediated mechanisms regulate DNA-binding activity of the G-group of bZIP transcription factors in Arabidopsis.
J Biol Chem. 2012, 287(33):27510-25

Pin PA, Nilsson O
The multifaceted roles of FT in plant development
Plant Cell Environ. 2012 Jun 14 [Epub ahead of print]

Chen X, Naramoto S, Robert S, Tejos R, Löfke C, Lin D, Yang Z, Friml J
ABP1 and ROP6 GTPase Signaling Regulate Clathrin-Mediated Endocytosis in Arabidopsis Roots
Curr Biol. 2012, 22(14):1326-32

Cooke JE, Eriksson ME, Junttila O
The Dynamic Nature of Bud Dormancy in Trees: Environmental Control and Molecular Mechanisms
Plant Cell Environ. 2012 10(35):1707-1728

Tuskan GA, DiFazio S, Faivre-Rampant P, Gaudet M, Harfouche A, Jorge V, Labbé JL, Ranjan P, Sabatti M, Slavov G, Street N, Tschaplinski TJ, Yin T
The obscure events contributing to the evolution of an incipient sex chromosome in Populus: a retrospective working hypothesis
Tree Genetics & Genomes 2012; 8(3):559-571

Sane PV, Ivanov AG, Öquist G,  Huner NPA
Thermoluminescence
In: J.J. Eaton-Rye, B.C. Tripathy and T.D. Sharkey, eds., Photosynthesis: Plastid Biology, Energy Conversion and Carbon Assimilation, Advances in Photosynthesis and Respiration 2012; 34: 445-474. Springer.

Chibani K, Tarrago L, Gualberto JM, Wingsle G, Rey P, Jacquot JP, Rouhier N
Atypical Thioredoxins in Poplar: The Glutathione-Dependent Thioredoxin-Like 2.1 Supports the Activity of Target Enzymes Possessing a Single Redox Active Cysteine
Plant Physiol. 2012, 159(2):592-605

Gapare WJ, Ivković M, Dillon SK, Fiona C, Evans R, Wu HX
Genetic parameters and provenance variation of Pinus radiata D. Don. 'Eldridge collection' in Australia 2: wood properties
Tree Genetics and Genomes 2012 Volume 8 (4):895-910

Robinson KM, Ingvarsson PK, Jansson S, Albrectsen BR
Genetic Variation in Functional Traits Influences Arthropod Community Composition in Aspen (Populus tremula L.)
PLoS ONE 2012; 7(5):e37679

Pin PA, Zhang W, Vogt SH, Dally N, Büttner B, Schulze-Buxloh G, Jelly NS, Chia TY, Mutasa-Göttgens ES, Dohm JC, Himmelbauer H, Weisshaar B, Kraus J, Gielen JJ, Lommel M, Weyens G, Wahl B, Schechert A, Nilsson O, Jung C, Kraft T, Müller AE
The Role of a Pseudo-Response Regulator Gene in Life Cycle Adaptation and Domestication of Beet
Curr Biol. 2012, 22(12):1095-1101

Gerber L, Eliasson M, Trygg J, Moritz T, Sundberg B
Multivariate curve resolution provides a high-throughput data processing pipeline for pyrolysis-gas chromatography/mass spectrometry
JOURNAL OF ANALYTICAL AND APPLIED PYROLYSIS 2012 95:95-100

Fries A
Genetic parameters, genetic gain and correlated responses in growth, fibre dimensions and wood density in a Scots pine breeding population
Annals of Forest Science, 2012 69(7):783-794

Inselsbacher E, Näsholm T
The below-ground perspective of forest plants: soil provides mainly organic nitrogen for plants and mycorrhizal fungi
New Phytol. 2012 May 4 [Epub ahead of print]

Roberts IN, Caputo C, Criado MV, Funk C
Senescence-associated proteases in plants
Physiol Plant. 2012 May;145(1):130-9

Wagner R, Aigner H, Funk C
FtsH proteases located in the plant chloroplast
Physiol Plant. 2012 May;145(1):203-14

Ismail M, Soolanayakanahally RJ, Ingvarsson PK, Guy RD , Jansson S, Silim SN, El-Kassaby YA
Comparative Nucleotide Diversity Across North American and European Populus Species
Journal of Molecular Evolution 2012 74(5-6): 257-272

Hornitschek P, Kohnen MV, Lorrain S, Rougemont J, Ljung K, López-Vidriero I, Franco-Zorrilla JM, Solano R, Trevisan M, Pradervand S, Xenarios I, Fankhauser C
Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling
Plant J. 2012 71(5):699-711

Decker D, Meng M, Gornicka A, Hofer A, Wilczynska M, Kleczkowski LA
Substrate kinetics and substrate effects on the quaternary structure of barley UDP-glucose pyrophosphorylase

Phytochemistry 2012 79:39-45

Hummel M, Cordewener JH, de Groot JC, Smeekens S, America AH, Hanson J
Dynamic protein composition of Arabidopsis thaliana cytosolic ribosomes in response to sucrose feeding as revealed by label free MS(E) proteomics
Proteomics 2012 12(7):1024-38

Madsen R, Banday VS, Moritz T, Trygg J, Lejon K
Altered metabolic signature in pre-diabetic NOD mice
PLoS One. 20127(4):e35445. Epub 2012 Apr 13

Strengbom J, Nordin A
Physical disturbance determines effects from nitrogen addition on ground vegetation in boreal coniferous forests
JOURNAL OF VEGETATION SCIENCE 2012 23(2)2 361-371

Chorell E, Svensson MB, Moritz T, Antti H
Physical fitness level is reflected by alterations in the human plasma metabolome
Mol Biosyst. 2012 Apr;8(4):1187-96. Epub 2012 Jan 27

Ståldal V, Cierlik I, Chen S, Landberg K, Baylis T, Myrenås M, Sundström JF, Eklund DM, Ljung K, Sundberg E
The Arabidopsis thaliana transcriptional activator STYLISH1 regulates genes affecting stamen development, cell expansion and timing of flowering
Plant Molecular Biology 2012, 78(6):545-559

Jänkänpää HJ, Mishra Y, Schröder WP, Jansson S
Metabolic profiling reveals metabolic shifts in Arabidopsis plants grown under different light conditions.
Plant, Cell & Environment 2012 Online

Pesquet, E
Plant proteases – from detection to function
Physiologia Plantarum, 2012, 145: 1–4

Magyar Z, Horváth B, Khan S, Mohammed B, Henriques R, De Veylder L, Bakó L, Scheres B, Bögre L
Arabidopsis E2FA stimulates proliferation and endocycle separately through RBR-bound and RBR-free complexes
EMBO J. 2012, 31(6):1480-93

Ivanov AG, Sane PV, Simidjiev I, Park YI, Huner NP, Oquist G
Restricted capacity for PSI-dependent cyclic electron flow in ΔpetE mutant compromises the ability for acclimation to iron stress in Synechococcus sp. PCC 7942 cells
Biochim Biophys Acta. 2012 1817(8):1277-1284

Genome-wide binding-site analysis of REVOLUTA reveals a link between leaf patterning and light-mediated growth responses
Plant J 2012 72: 31-42

The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence element
Development 2012 139: 1978-1986

Spatial control of flowering by DELLA proteins in Arabidopsis thaliana
Development 2012 139: 4072-4082