BibBase https://bibbase.org/zotero/upscpub
generated by bibbase.org
  2013 (91)
Aspen SUCROSE TRANSPORTER3 Allocates Carbon into Wood Fibers. Mahboubi, A., Ratke, C., Gorzsas, A., Kumar, M., Mellerowicz, E. J., & Niittylä, T. PLANT PHYSIOLOGY, 163(4): 1729–1740. December 2013.
Aspen SUCROSE TRANSPORTER3 Allocates Carbon into Wood Fibers [link]Paper   doi   link   bibtex  
Very rapid phosphorylation kinetics suggest a unique role for Lhcb2 during state transitions in Arabidopsis. Leoni, C., Pietrzykowska, M., Kiss, A. Z., Suorsa, M., Ceci, L. R., Aro, E., & Jansson, S. The Plant Journal, 76(2): 236–246. October 2013.
Very rapid phosphorylation kinetics suggest a unique role for Lhcb2 during state transitions in Arabidopsis [link]Paper   doi   link   bibtex  
A DYW-protein knockout in Physcomitrella affects two closely spaced mitochondrial editing sites and causes a severe developmental phenotype. Schallenberg-Rüdinger, M., Kindgren, P., Zehrmann, A., Small, I., & Knoop, V. The Plant Journal, 76(3): 420–432. 2013. _eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1111/tpj.12304
A DYW-protein knockout in Physcomitrella affects two closely spaced mitochondrial editing sites and causes a severe developmental phenotype [link]Paper   doi   link   bibtex   abstract  
ECHIDNA-mediated post-Golgi trafficking of auxin carriers for differential cell elongation. Boutte, Y., Jonsson, K., McFarlane, H. E., Johnson, E., Gendre, D., Swarup, R., Friml, J., Samuels, L., Robert, S., & Bhalerao, R. P. Proceedings of the National Academy of Sciences, 110(40): 16259–16264. October 2013.
ECHIDNA-mediated post-Golgi trafficking of auxin carriers for differential cell elongation [link]Paper   doi   link   bibtex  
Endodermal ABA Signaling Promotes Lateral Root Quiescence during Salt Stress in Arabidopsis Seedlings. Duan, L., Dietrich, D., Ng, C. H., Chan, P. M. Y., Bhalerao, R. P., Bennett, M. J., & Dinneny, J. R. The Plant Cell, 25(1): 324–341. February 2013.
Endodermal ABA Signaling Promotes Lateral Root Quiescence during Salt Stress in <i>Arabidopsis</i> Seedlings [link]Paper   doi   link   bibtex   abstract  
The Norway spruce genome sequence and conifer genome evolution. Nystedt, B., Street, N. R., Wetterbom, A., Zuccolo, A., Lin, Y., Scofield, D. G., Vezzi, F., Delhomme, N., Giacomello, S., Alexeyenko, A., Vicedomini, R., Sahlin, K., Sherwood, E., Elfstrand, M., Gramzow, L., Holmberg, K., Hällman, J., Keech, O., Klasson, L., Koriabine, M., Kucukoglu, M., Käller, M., Luthman, J., Lysholm, F., Niittylä, T., Olson, Å., Rilakovic, N., Ritland, C., Rosselló, J. A., Sena, J., Svensson, T., Talavera-López, C., Theißen, G., Tuominen, H., Vanneste, K., Wu, Z., Zhang, B., Zerbe, P., Arvestad, L., Bhalerao, R. P., Bohlmann, J., Bousquet, J., Garcia Gil, R., Hvidsten, T. R., de Jong, P., MacKay, J., Morgante, M., Ritland, K., Sundberg, B., Lee Thompson, S., Van de Peer, Y., Andersson, B., Nilsson, O., Ingvarsson, P. K., Lundeberg, J., & Jansson, S. Nature, 497(7451): 579–584. May 2013.
The Norway spruce genome sequence and conifer genome evolution [link]Paper   doi   link   bibtex  
Daylength mediated control of seasonal growth patterns in perennial trees. Petterle, A., Karlberg, A., & Bhalerao, R. P. Current Opinion in Plant Biology, 16(3): 301–306. June 2013.
Daylength mediated control of seasonal growth patterns in perennial trees [link]Paper   doi   link   bibtex  
ABCG9, ABCG11 and ABCG14 ABC transporters are required for vascular development in Arabidopsis. Le Hir, R., Sorin, C., Chakraborti, D., Moritz, T., Schaller, H., Tellier, F., Robert, S., Morin, H., Bakó, L., & Bellini, C. The Plant Journal, 76(5): 811–824. December 2013.
ABCG9, ABCG11 and ABCG14 ABC transporters are required for vascular development in Arabidopsis [link]Paper   doi   link   bibtex  
Pinus taeda cDNA Microarray as a Tool for Candidate Gene Identification for Local Red/Far-Red Light Adaptive Response in Pinus sylvestris. Ranade, S. S., Abrahamsson, S., Niemi, J., & García-Gil, M. R. American Journal of Plant Sciences, 4(3): 479–493. March 2013. Number: 3 Publisher: Scientific Research Publishing
Pinus taeda cDNA Microarray as a Tool for Candidate Gene Identification for Local Red/Far-Red Light Adaptive Response in Pinus sylvestris [link]Paper   doi   link   bibtex   abstract  
Post mortem function of AtMC9 in xylem vessel elements. Bollhöner, B., Zhang, B., Stael, S., Denancé, N., Overmyer, K., Goffner, D., Breusegem, F. V., & Tuominen, H. New Phytologist, 200(2): 498–510. 2013. _eprint: https://nph.onlinelibrary.wiley.com/doi/pdf/10.1111/nph.12387
Post mortem function of AtMC9 in xylem vessel elements [link]Paper   doi   link   bibtex   abstract  
Trans-Golgi Network Localized ECHIDNA/Ypt Interacting Protein Complex Is Required for the Secretion of Cell Wall Polysaccharides in Arabidopsis. Gendre, D., McFarlane, H. E., Johnson, E., Mouille, G., Sjödin, A., Oh, J., Levesque-Tremblay, G., Watanabe, Y., Samuels, L., & Bhalerao, R. P. The Plant Cell, 25(7): 2633–2646. July 2013.
Trans-Golgi Network Localized ECHIDNA/Ypt Interacting Protein Complex Is Required for the Secretion of Cell Wall Polysaccharides in Arabidopsis [link]Paper   doi   link   bibtex   abstract  
Requirement for the plastidial oxidative pentose phosphate pathway for nitrate assimilation in Arabidopsis. Bussell, J. D., Keech, O., Fenske, R., & Smith, S. M. The Plant Journal, 75(4): 578–591. 2013. _eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1111/tpj.12222
Requirement for the plastidial oxidative pentose phosphate pathway for nitrate assimilation in Arabidopsis [link]Paper   doi   link   bibtex   abstract  
The protein quality control system manages plant defence compound synthesis. Pollier, J., Moses, T., González-Guzmán, M., De Geyter, N., Lippens, S., Vanden Bossche, R., Marhavý, P., Kremer, A., Morreel, K., Guérin, C. J., Tava, A., Oleszek, W., Thevelein, J. M., Campos, N., Goormachtig, S., & Goossens, A. Nature, 504(7478): 148–152. December 2013.
doi   link   bibtex   abstract  
OnPLS integration of transcriptomic, proteomic and metabolomic data shows multi-level oxidative stress responses in the cambium of transgenic hipI- superoxide dismutase Populus plants. Srivastava, V., Obudulu, O., Bygdell, J., Löfstedt, T., Rydén, P., Nilsson, R., Ahnlund, M., Johansson, A., Jonsson, P., Freyhult, E., Qvarnström, J., Karlsson, J., Melzer, M., Moritz, T., Trygg, J., Hvidsten, T. R., & Wingsle, G. BMC Genomics, 14(1): 893. December 2013.
OnPLS integration of transcriptomic, proteomic and metabolomic data shows multi-level oxidative stress responses in the cambium of transgenic hipI- superoxide dismutase Populus plants [link]Paper   doi   link   bibtex   abstract  
ROOT ULTRAVIOLET B-SENSITIVE1/WEAK AUXIN RESPONSE3 Is Essential for Polar Auxin Transport in Arabidopsis. Yu, H., Karampelias, M., Robert, S., Peer, W. A., Swarup, R., Ye, S., Ge, L., Cohen, J., Murphy, A., Friml, J., & Estelle, M. Plant Physiology, 162(2): 965–976. May 2013.
ROOT ULTRAVIOLET B-SENSITIVE1/WEAK AUXIN RESPONSE3 Is Essential for Polar Auxin Transport in Arabidopsis [link]Paper   doi   link   bibtex   abstract  
Root gravitropism and root hair development constitute coupled developmental responses regulated by auxin homeostasis in the Arabidopsis root apex. Rigas, S., Ditengou, F. A., Ljung, K., Daras, G., Tietz, O., Palme, K., & Hatzopoulos, P. New Phytologist, 197(4): 1130–1141. March 2013.
Root gravitropism and root hair development constitute coupled developmental responses regulated by auxin homeostasis in the <i>Arabidopsis</i> root apex [link]Paper   doi   link   bibtex  
Perspectives on plant photorespiratory metabolism. Fernie, A. R., Bauwe, H., Eisenhut, M., Florian, A., Hanson, D. T., Hagemann, M., Keech, O., Mielewczik, M., Nikoloski, Z., Peterhänsel, C., Roje, S., Sage, R., Timm, S., von Cammerer, S., Weber, A. P. M., & Westhoff, P. Plant Biology, 15(4): 748–753. July 2013.
Perspectives on plant photorespiratory metabolism [link]Paper   doi   link   bibtex  
Soluble Carbohydrates Regulate Auxin Biosynthesis via PIF Proteins in Arabidopsis. Sairanen, I., Novák, O., Pěnčík, A., Ikeda, Y., Jones, B., Sandberg, G., & Ljung, K. The Plant Cell, 24(12): 4907–4916. January 2013.
Soluble Carbohydrates Regulate Auxin Biosynthesis via PIF Proteins in <i>Arabidopsis</i> [link]Paper   doi   link   bibtex   abstract  
Engineering photorespiration: current state and future possibilities. Peterhansel, C., Krause, K., Braun, H., Espie, G. S., Fernie, A. R., Hanson, D. T., Keech, O., Maurino, V. G., Mielewczik, M., & Sage, R. F. Plant Biology, 15(4): 754–758. July 2013.
Engineering photorespiration: current state and future possibilities [link]Paper   doi   link   bibtex  
Co-expression analysis, proteomic and metabolomic study on the impact of a Deg/HtrA protease triple mutant in Synechocystis sp. PCC 6803 exposed to temperature and high light stress. Miranda, H., Cheregi, O., Netotea, S., Hvidsten, T. R., Moritz, T., & Funk, C. Journal of Proteomics, 78: 294–311. January 2013.
Co-expression analysis, proteomic and metabolomic study on the impact of a Deg/HtrA protease triple mutant in Synechocystis sp. PCC 6803 exposed to temperature and high light stress [link]Paper   doi   link   bibtex  
MYB103 is required for FERULATE-5-HYDROXYLASE expression and syringyl lignin biosynthesis in Arabidopsis stems. Öhman, D., Demedts, B., Kumar, M., Gerber, L., Gorzsás, A., Goeminne, G., Hedenström, M., Ellis, B., Boerjan, W., & Sundberg, B. The Plant Journal, 73(1): 63–76. January 2013.
MYB103 is required for <i>FERULATE-5-HYDROXYLASE</i> expression and syringyl lignin biosynthesis in Arabidopsis stems [link]Paper   doi   link   bibtex  
A second-generation diagnostic single nucleotide polymorphism (SNP)-based assay, optimized to distinguish among eight poplar (Populus L.) species and their early hybrids. Isabel, N., Lamothe, M., & Thompson, S. L. Tree Genetics & Genomes, 9(2): 621–626. April 2013.
A second-generation diagnostic single nucleotide polymorphism (SNP)-based assay, optimized to distinguish among eight poplar (Populus L.) species and their early hybrids [link]Paper   doi   link   bibtex  
Plastid-to-nucleus communication, signals controlling the running of the plant cell. Barajas-López, J. d. D., Blanco, N. E., & Strand, Å. Biochimica et Biophysica Acta (BBA) - Molecular Cell Research, 1833(2): 425–437. February 2013.
Plastid-to-nucleus communication, signals controlling the running of the plant cell [link]Paper   doi   link   bibtex   abstract  
Exploring the Nitrogen Ingestion of Aphids — A New Method Using Electrical Penetration Graph and 15N Labelling. Kuhlmann, F., Opitz, S. E. W., Inselsbacher, E., Ganeteg, U., Näsholm, T., & Ninkovic, V. PLoS ONE, 8(12): e83085. December 2013.
Exploring the Nitrogen Ingestion of Aphids — A New Method Using Electrical Penetration Graph and 15N Labelling [link]Paper   doi   link   bibtex  
Transcriptome profiling of radiata pine branches reveals new insights into reaction wood formation with implications in plant gravitropism. Li, X., Yang, X., & Wu, H. X BMC Genomics, 14(1): 768. 2013.
Transcriptome profiling of radiata pine branches reveals new insights into reaction wood formation with implications in plant gravitropism [link]Paper   doi   link   bibtex  
Characterization of cytokinin signaling and homeostasis gene families in two hardwood tree species: Populus trichocarpa and Prunus persica. Immanen, J., Nieminen, K., Duchens Silva, H., Rodríguez Rojas, F., Meisel, L. A, Silva, H., Albert, V. A, Hvidsten, T. R, & Helariutta, Y. BMC Genomics, 14(1): 885. 2013.
Characterization of cytokinin signaling and homeostasis gene families in two hardwood tree species: Populus trichocarpa and Prunus persica [link]Paper   doi   link   bibtex  
Arabidopsis WAT1 is a vacuolar auxin transport facilitator required for auxin homoeostasis. Ranocha, P., Dima, O., Nagy, R., Felten, J., Corratgé-Faillie, C., Novák, O., Morreel, K., Lacombe, B., Martinez, Y., Pfrunder, S., Jin, X., Renou, J., Thibaud, J., Ljung, K., Fischer, U., Martinoia, E., Boerjan, W., & Goffner, D. Nature Communications, 4(1): 2625. December 2013.
Arabidopsis WAT1 is a vacuolar auxin transport facilitator required for auxin homoeostasis [link]Paper   doi   link   bibtex  
De Novo SNP Discovery in the Scandinavian Brown Bear (Ursus arctos). Norman, A. J., Street, N. R., & Spong, G. PLoS ONE, 8(11): e81012. November 2013.
De Novo SNP Discovery in the Scandinavian Brown Bear (Ursus arctos) [link]Paper   doi   link   bibtex  
The impact of simulated chronic nitrogen deposition on the biomass and N $_{\textrm{2}}$ -fixation activity of two boreal feather moss–cyanobacteria associations. Gundale, M. J., Bach, L. H., & Nordin, A. Biology Letters, 9(6): 20130797. December 2013.
The impact of simulated chronic nitrogen deposition on the biomass and N $_{\textrm{2}}$ -fixation activity of two boreal feather moss–cyanobacteria associations [link]Paper   doi   link   bibtex   abstract  
Reduced Wall Acetylation Proteins Play Vital and Distinct Roles in Cell Wall O -Acetylation in Arabidopsis. Manabe, Y., Verhertbruggen, Y., Gille, S., Harholt, J., Chong, S., Pawar, P. M., Mellerowicz, E. J., Tenkanen, M., Cheng, K., Pauly, M., & Scheller, H. V. Plant Physiology, 163(3): 1107–1117. October 2013.
Reduced Wall Acetylation Proteins Play Vital and Distinct Roles in Cell Wall <i>O</i> -Acetylation in Arabidopsis [link]Paper   doi   link   bibtex   abstract  
Structural and gene expression analyses of uptake hydrogenases and other proteins involved in nitrogenase protection in Frankia. Richau, K., Kudahettige, R., Pujic, P, Kudahettige, N., & Sellstedt, A Journal of Biosciences, 38(4): 703–712. November 2013.
Structural and gene expression analyses of uptake hydrogenases and other proteins involved in nitrogenase protection in Frankia [link]Paper   doi   link   bibtex  
Arabidopsis SABRE and CLASP interact to stabilize cell division plane orientation and planar polarity. Pietra, S., Gustavsson, A., Kiefer, C., Kalmbach, L., Hörstedt, P., Ikeda, Y., Stepanova, A. N., Alonso, J. M., & Grebe, M. Nature Communications, 4(1): 2779. December 2013.
Arabidopsis SABRE and CLASP interact to stabilize cell division plane orientation and planar polarity [link]Paper   doi   link   bibtex  
A genome‐wide screen for ethylene‐induced Ethylene Response Factors ( \textlessspan style="font-variant:small-caps;"\textgreaterERF\textless/span\textgreater s) in hybrid aspen stem identifies \textlessspan style="font-variant:small-caps;"\textgreaterERF\textless/span\textgreater genes that modify stem growth and wood properties. Vahala, J., Felten, J., Love, J., Gorzsás, A., Gerber, L., Lamminmäki, A., Kangasjärvi, J., & Sundberg, B. New Phytologist, 200(2): 511–522. October 2013.
A genome‐wide screen for ethylene‐induced Ethylene Response Factors ( \textlessspan style="font-variant:small-caps;"\textgreaterERF\textless/span\textgreater s) in hybrid aspen stem identifies <i> \textlessspan style="font-variant:small-caps;"\textgreaterERF\textless/span\textgreater </i> genes that modify stem growth and wood properties [link]Paper   doi   link   bibtex  
Long-term ammonium nutrition of Arabidopsis increases the extrachloroplastic NAD(P)H/NAD(P) $^{\textrm{+}}$ ratio and mitochondrial reactive oxygen species level in leaves but does not impair photosynthetic capacity: NH $_{\textrm{4}}$ $^{\textrm{+}}$ nutrition and leaf redox homeostasis. PODGóRSKA, A., Gieczewska, K., ŁUKAWSKA-KUźMA, K., Rasmusson, A. G., GARDESTRöM, P., & Szal, B. Plant, Cell & Environment,n/a–n/a. June 2013.
Long-term ammonium nutrition of <i>Arabidopsis</i> increases the extrachloroplastic NAD(P)H/NAD(P) $^{\textrm{+}}$ ratio and mitochondrial reactive oxygen species level in leaves but does not impair photosynthetic capacity: NH $_{\textrm{4}}$ $^{\textrm{+}}$ nutrition and leaf redox homeostasis [link]Paper   doi   link   bibtex  
Regulation of Auxin Homeostasis and Gradients in Arabidopsis Roots through the Formation of the Indole-3-Acetic Acid Catabolite 2-Oxindole-3-Acetic Acid. Pěnčík, A., Simonovik, B., Petersson, S. V., Henyková, E., Simon, S., Greenham, K., Zhang, Y., Kowalczyk, M., Estelle, M., Zažímalová, E., Novák, O., Sandberg, G., & Ljung, K. The Plant Cell, 25(10): 3858–3870. October 2013.
Regulation of Auxin Homeostasis and Gradients in <i>Arabidopsis</i> Roots through the Formation of the Indole-3-Acetic Acid Catabolite 2-Oxindole-3-Acetic Acid [link]Paper   doi   link   bibtex  
The Use of Chemical Biology to Study Plant Cellular Processes: Subcellular Trafficking. Haeger, A., Łangowska, M., & Robert, S. In Audenaert, D., & Overvoorde, P., editor(s), Plant Chemical Biology, pages 218–231. John Wiley & Sons, Inc, Hoboken, NJ, November 2013.
The Use of Chemical Biology to Study Plant Cellular Processes: Subcellular Trafficking [link]Paper   doi   link   bibtex  
Does background nitrogen deposition affect the response of boreal vegetation to fertilization?. Hedwall, P. O., Nordin, A., Strengbom, J., Brunet, J., & Olsson, B. Oecologia, 173(2): 615–624. October 2013.
Does background nitrogen deposition affect the response of boreal vegetation to fertilization? [link]Paper   doi   link   bibtex  
Sequential induction of auxin efflux and influx carriers regulates lateral root emergence. Péret, B., Middleton, A. M, French, A. P, Larrieu, A., Bishopp, A., Njo, M., Wells, D. M, Porco, S., Mellor, N., Band, L. R, Casimiro, I., Kleine‐Vehn, J., Vanneste, S., Sairanen, I., Mallet, R., Sandberg, G., Ljung, K., Beeckman, T., Benkova, E., Friml, J., Kramer, E., King, J. R, De Smet, I., Pridmore, T., Owen, M., & Bennett, M. J Molecular Systems Biology, 9(1): 699. January 2013.
Sequential induction of auxin efflux and influx carriers regulates lateral root emergence [link]Paper   doi   link   bibtex  
Enhanced cellulose orientation analysis in complex model plant tissues. Rüggeberg, M., Saxe, F., Metzger, T. H., Sundberg, B., Fratzl, P., & Burgert, I. Journal of Structural Biology, 183(3): 419–428. September 2013.
Enhanced cellulose orientation analysis in complex model plant tissues [link]Paper   doi   link   bibtex  
Disturbed Local Auxin Homeostasis Enhances Cellular Anisotropy and Reveals Alternative Wiring of Auxin-ethylene Crosstalk in Brachypodium distachyon Seminal Roots. Pacheco-Villalobos, D., Sankar, M., Ljung, K., & Hardtke, C. S. PLoS Genetics, 9(6): e1003564. June 2013.
Disturbed Local Auxin Homeostasis Enhances Cellular Anisotropy and Reveals Alternative Wiring of Auxin-ethylene Crosstalk in Brachypodium distachyon Seminal Roots [link]Paper   doi   link   bibtex  
Proteomic Amino-Termini Profiling Reveals Targeting Information for Protein Import into Complex Plastids. Huesgen, P. F., Alami, M., Lange, P. F., Foster, L. J., Schröder, W. P., Overall, C. M., & Green, B. R. PLoS ONE, 8(9): e74483. September 2013.
Proteomic Amino-Termini Profiling Reveals Targeting Information for Protein Import into Complex Plastids [link]Paper   doi   link   bibtex  
Spatial Coordination between Stem Cell Activity and Cell Differentiation in the Root Meristem. Moubayidin, L., Di Mambro, R., Sozzani, R., Pacifici, E., Salvi, E., Terpstra, I., Bao, D., van Dijken , A., Dello Ioio, R., Perilli, S., Ljung, K., Benfey, P., Heidstra, R., Costantino, P., & Sabatini, S. Developmental Cell, 26(4): 405–415. August 2013.
Spatial Coordination between Stem Cell Activity and Cell Differentiation in the Root Meristem [link]Paper   doi   link   bibtex  
Cell Wall Polysaccharides are Mislocalized to the Vacuole in echidna Mutants. McFarlane, H. E., Watanabe, Y., Gendre, D., Carruthers, K., Levesque-Tremblay, G., Haughn, G. W., Bhalerao, R. P., & Samuels, L. Plant and Cell Physiology, 54(11): 1867–1880. November 2013.
Cell Wall Polysaccharides are Mislocalized to the Vacuole in echidna Mutants [link]Paper   doi   link   bibtex  
Effect of genotype by spacing interaction on radiata pine genetic parameters for height and diameter growth. Lin, Y., Yang, H., Ivković, M., Gapare, W. J., Colin Matheson, A., & Wu, H. X. Forest Ecology and Management, 304: 204–211. September 2013.
Effect of genotype by spacing interaction on radiata pine genetic parameters for height and diameter growth [link]Paper   doi   link   bibtex  
Thermospermine levels are controlled by an auxin-dependent feedback loop mechanism in Populus xylem. Milhinhos, A., Prestele, J., Bollhöner, B., Matos, A., Vera-Sirera, F., Rambla, J. L., Ljung, K., Carbonell, J., Blázquez, M. A., Tuominen, H., & Miguel, C. M. The Plant Journal, 75(4): 685–698. August 2013.
Thermospermine levels are controlled by an auxin-dependent feedback loop mechanism in <i>Populus</i> xylem [link]Paper   doi   link   bibtex  
Isolation of monomeric photosystem II that retains the subunit PsbS. Haniewicz, P., De Sanctis, D., Büchel, C., Schröder, W. P., Loi, M. C., Kieselbach, T., Bochtler, M., & Piano, D. Photosynthesis Research, 118(3): 199–207. December 2013.
Isolation of monomeric photosystem II that retains the subunit PsbS [link]Paper   doi   link   bibtex  
Overexpression of the Vacuolar Sugar Carrier AtSWEET16 Modifies Germination, Growth, and Stress Tolerance in Arabidopsis. Klemens, P. A., Patzke, K., Deitmer, J., Spinner, L., Le Hir, R., Bellini, C., Bedu, M., Chardon, F., Krapp, A., & Neuhaus, H. E. Plant Physiology, 163(3): 1338–1352. October 2013.
Overexpression of the Vacuolar Sugar Carrier <i>AtSWEET16</i> Modifies Germination, Growth, and Stress Tolerance in Arabidopsis [link]Paper   doi   link   bibtex   abstract  
The Endoplasmic Reticulum Is the Main Membrane Source for Biogenesis of the Lytic Vacuole in Arabidopsis. Viotti, C., Krüger, F., Krebs, M., Neubert, C., Fink, F., Lupanga, U., Scheuring, D., Boutté, Y., Frescatada-Rosa, M., Wolfenstetter, S., Sauer, N., Hillmer, S., Grebe, M., & Schumacher, K. The Plant Cell, 25(9): 3434–3449. October 2013.
The Endoplasmic Reticulum Is the Main Membrane Source for Biogenesis of the Lytic Vacuole in <i>Arabidopsis</i> [link]Paper   doi   link   bibtex   abstract  
Defining the selectivity of processes along the auxin response chain: a study using auxin analogues. Simon, S., Kubeš, M., Baster, P., Robert, S., Dobrev, P. I., Friml, J., Petrášek, J., & Zažímalová, E. New Phytologist, 200(4): 1034–1048. December 2013.
Defining the selectivity of processes along the auxin response chain: a study using auxin analogues [link]Paper   doi   link   bibtex  
Organic nitrogen uptake of Scots pine seedlings is independent of current carbohydrate supply. Gruffman, L., Palmroth, S., & Nasholm, T. Tree Physiology, 33(6): 590–600. June 2013.
Organic nitrogen uptake of Scots pine seedlings is independent of current carbohydrate supply [link]Paper   doi   link   bibtex  
The Arabidopsis LRR-RLK, PXC1, is a regulator of secondary wall formation correlated with the TDIF-PXY/TDR-WOX4 signaling pathway. Wang, J., Kucukoglu, M., Zhang, L., Chen, P., Decker, D., Nilsson, O., Jones, B., Sandberg, G., & Zheng, B. BMC Plant Biology, 13(1): 94. 2013.
The Arabidopsis LRR-RLK, PXC1, is a regulator of secondary wall formation correlated with the TDIF-PXY/TDR-WOX4 signaling pathway [link]Paper   doi   link   bibtex  
The Caspase-Related Protease Separase (EXTRA SPINDLE POLES) Regulates Cell Polarity and Cytokinesis in Arabidopsis[C][W]. Moschou, P. N., Smertenko, A. P., Minina, E. A., Fukada, K., Savenkov, E. I., Robert, S., Hussey, P. J., & Bozhkov, P. V. The Plant Cell, 25(6): 2171–2186. June 2013.
The Caspase-Related Protease Separase (EXTRA SPINDLE POLES) Regulates Cell Polarity and Cytokinesis in Arabidopsis[C][W] [link]Paper   doi   link   bibtex   abstract  
Role of CBFs as Integrators of Chloroplast Redox, Phytochrome and Plant Hormone Signaling during Cold Acclimation. Kurepin, L., Dahal, K., Savitch, L., Singh, J., Bode, R., Ivanov, A., Hurry, V., & Hüner, N. International Journal of Molecular Sciences, 14(6): 12729–12763. June 2013.
Role of CBFs as Integrators of Chloroplast Redox, Phytochrome and Plant Hormone Signaling during Cold Acclimation [link]Paper   doi   link   bibtex  
A Conserved Rubredoxin Is Necessary for Photosystem II Accumulation in Diverse Oxygenic Photoautotrophs. Calderon, R. H., García-Cerdán, J. G., Malnoë, A., Cook, R., Russell, J. J., Gaw, C., Dent, R. M., de Vitry, C., & Niyogi, K. K. Journal of Biological Chemistry, 288(37): 26688–26696. September 2013.
A Conserved Rubredoxin Is Necessary for Photosystem II Accumulation in Diverse Oxygenic Photoautotrophs [link]Paper   doi   link   bibtex  
A galactosyltransferase acting on arabinogalactan protein glycans is essential for embryo development in Arabidopsis. Geshi, N., Johansen, J. N., Dilokpimol, A., Rolland, A., Belcram, K., Verger, S., Kotake, T., Tsumuraya, Y., Kaneko, S., Tryfona, T., Dupree, P., Scheller, H. V., Höfte, H., & Mouille, G. The Plant Journal,n/a–n/a. August 2013.
A galactosyltransferase acting on arabinogalactan protein glycans is essential for embryo development in Arabidopsis [link]Paper   doi   link   bibtex  
Efficiency of photosynthetic water oxidation at ambient and depleted levels of inorganic carbon. Shevela, D., Nöring, B., Koroidov, S., Shutova, T., Samuelsson, G., & Messinger, J. Photosynthesis Research, 117(1-3): 401–412. November 2013.
Efficiency of photosynthetic water oxidation at ambient and depleted levels of inorganic carbon [link]Paper   doi   link   bibtex  
Xyloglucan endotransglucosylase/hydrolase (XTH) overexpression affects growth and cell wall mechanics in etiolated Arabidopsis hypocotyls. Miedes, E., Suslov, D., Vandenbussche, F., Kenobi, K., Ivakov, A., Van Der Straeten, D., Lorences, E. P., Mellerowicz, E. J., Verbelen, J., & Vissenberg, K. Journal of Experimental Botany, 64(8): 2481–2497. May 2013.
Xyloglucan endotransglucosylase/hydrolase (XTH) overexpression affects growth and cell wall mechanics in etiolated Arabidopsis hypocotyls [link]Paper   doi   link   bibtex  
Genetic information from progeny trials: a comparison between progenies generated by open pollination and by controlled crosses. Hallingbäck, H. R., & Jansson, G. Tree Genetics & Genomes, 9(3): 731–740. June 2013.
Genetic information from progeny trials: a comparison between progenies generated by open pollination and by controlled crosses [link]Paper   doi   link   bibtex  
Using OPLS-DA to find new hypotheses in vast amounts of gene expression data — Studying the progression of cardiac hypertrophy in the heart of aorta ligated rat. Gennebäck, N., Malm, L., Hellman, U., Waldenström, A., & Mörner, S. Gene, 522(1): 27–36. June 2013.
Using OPLS-DA to find new hypotheses in vast amounts of gene expression data — Studying the progression of cardiac hypertrophy in the heart of aorta ligated rat [link]Paper   doi   link   bibtex  
Auxin controls Arabidopsis anther dehiscence by regulating endothecium lignification and jasmonic acid biosynthesis. Cecchetti, V., Altamura, M. M., Brunetti, P., Petrocelli, V., Falasca, G., Ljung, K., Costantino, P., & Cardarelli, M. The Plant Journal, 74(3): 411–422. May 2013.
Auxin controls Arabidopsis anther dehiscence by regulating endothecium lignification and jasmonic acid biosynthesis [link]Paper   doi   link   bibtex  
Cell Polarity and Patterning by PIN Trafficking through Early Endosomal Compartments in Arabidopsis thaliana. Tanaka, H., Kitakura, S., Rakusová, H., Uemura, T., Feraru, M. I., De Rycke, R., Robert, S., Kakimoto, T., & Friml, J. PLoS Genetics, 9(5): e1003540. May 2013.
Cell Polarity and Patterning by PIN Trafficking through Early Endosomal Compartments in Arabidopsis thaliana [link]Paper   doi   link   bibtex  
The Plant-Specific Dof Transcription Factors Family: New Players Involved in Vascular System Development and Functioning in Arabidopsis. Le Hir, R., & Bellini, C. Frontiers in Plant Science, 4. 2013.
The Plant-Specific Dof Transcription Factors Family: New Players Involved in Vascular System Development and Functioning in Arabidopsis [link]Paper   doi   link   bibtex  
Acetylation of woody lignocellulose: significance and regulation. Pawar, P. M., Koutaniemi, S., Tenkanen, M., & Mellerowicz, E. J. Frontiers in Plant Science, 4. 2013.
Acetylation of woody lignocellulose: significance and regulation [link]Paper   doi   link   bibtex  
Transcription factor binding kinetics constrain noise suppression via negative feedback. Grönlund, A., Lötstedt, P., & Elf, J. Nature Communications, 4(1): 1864. October 2013.
Transcription factor binding kinetics constrain noise suppression via negative feedback [link]Paper   doi   link   bibtex  
Auxin: simply complicated. Sauer, M., Robert, S., & Kleine-Vehn, J. Journal of Experimental Botany, 64(9): 2565–2577. June 2013.
Auxin: simply complicated [link]Paper   doi   link   bibtex  
An Auxin Transport Mechanism Restricts Positive Orthogravitropism in Lateral Roots. Rosquete, M., von Wangenheim , D., Marhavý, P., Barbez, E., Stelzer, E., Benková, E., Maizel, A., & Kleine-Vehn, J. Current Biology, 23(9): 817–822. May 2013.
An Auxin Transport Mechanism Restricts Positive Orthogravitropism in Lateral Roots [link]Paper   doi   link   bibtex  
Temperature-dependent regulation of flowering by antagonistic FLM variants. Posé, D., Verhage, L., Ott, F., Yant, L., Mathieu, J., Angenent, G. C., Immink, R. G. H., & Schmid, M. Nature, 503(7476): 414–417. November 2013.
doi   link   bibtex   abstract  
Regulation of temperature-responsive flowering by MADS-box transcription factor repressors. Lee, J. H., Ryu, H., Chung, K. S., Posé, D., Kim, S., Schmid, M., & Ahn, J. H. Science (New York, N.Y.), 342(6158): 628–632. November 2013.
doi   link   bibtex   abstract  
Regulation of flowering by trehalose-6-phosphate signaling in Arabidopsis thaliana. Wahl, V., Ponnu, J., Schlereth, A., Arrivault, S., Langenecker, T., Franke, A., Feil, R., Lunn, J. E., Stitt, M., & Schmid, M. Science (New York, N.Y.), 339(6120): 704–707. February 2013.
doi   link   bibtex   abstract  
Geographic structure in metabolome and herbivore community co-occurs with genetic structure in plant defence genes. Bernhardsson, C., Robinson, K. M., Abreu, I. N., Jansson, S., Albrectsen, B. R., & Ingvarsson, P. K. Ecology Letters, 16(6): 791–798. June 2013.
Geographic structure in metabolome and herbivore community co-occurs with genetic structure in plant defence genes [link]Paper   doi   link   bibtex  
Coordination of auxin and ethylene biosynthesis by the aminotransferase VAS1. Zheng, Z., Guo, Y., Novák, O., Dai, X., Zhao, Y., Ljung, K., Noel, J. P, & Chory, J. Nature Chemical Biology, 9(4): 244–246. April 2013.
Coordination of auxin and ethylene biosynthesis by the aminotransferase VAS1 [link]Paper   doi   link   bibtex  
Leaf Fructose Content Is Controlled by the Vacuolar Transporter SWEET17 in Arabidopsis. Chardon, F., Bedu, M., Calenge, F., Klemens, P., Spinner, L., Clement, G., Chietera, G., Léran, S., Ferrand, M., Lacombe, B., Loudet, O., Dinant, S., Bellini, C., Neuhaus, H., Daniel-Vedele, F., & Krapp, A. Current Biology, 23(8): 697–702. April 2013.
Leaf Fructose Content Is Controlled by the Vacuolar Transporter SWEET17 in Arabidopsis [link]Paper   doi   link   bibtex  
Non-Cell-Autonomous Postmortem Lignification of Tracheary Elements in Zinnia elegans. Pesquet, E., Zhang, B., Gorzsás, A., Puhakainen, T., Serk, H., Escamez, S., Barbier, O., Gerber, L., Courtois-Moreau, C., Alatalo, E., Paulin, L., Kangasjärvi, J., Sundberg, B., Goffner, D., & Tuominen, H. The Plant Cell, 25(4): 1314–1328. May 2013.
Non-Cell-Autonomous Postmortem Lignification of Tracheary Elements in <i>Zinnia elegans</i> [link]Paper   doi   link   bibtex   abstract  
Influence of cambial age and climate on ring width and wood density in Pinus radiata families. Ivković, M., Gapare, W., Wu, H., Espinoza, S., & Rozenberg, P. Annals of Forest Science, 70(5): 525–534. July 2013.
Influence of cambial age and climate on ring width and wood density in Pinus radiata families [link]Paper   doi   link   bibtex  
PAPP5 Is Involved in the Tetrapyrrole Mediated Plastid Signalling during Chloroplast Development. Barajas-López, J. d. D., Kremnev, D., Shaikhali, J., Piñas-Fernández, A., & Strand, Å. PLoS ONE, 8(3): e60305. March 2013.
PAPP5 Is Involved in the Tetrapyrrole Mediated Plastid Signalling during Chloroplast Development [link]Paper   doi   link   bibtex  
Cyclin-dependent Kinase E1 (CDKE1) Provides a Cellular Switch in Plants between Growth and Stress Responses. Ng, S., Giraud, E., Duncan, O., Law, S. R., Wang, Y., Xu, L., Narsai, R., Carrie, C., Walker, H., Day, D. A., Blanco, N. E., Strand, Å., Whelan, J., & Ivanova, A. Journal of Biological Chemistry, 288(5): 3449–3459. February 2013.
Cyclin-dependent Kinase E1 (CDKE1) Provides a Cellular Switch in Plants between Growth and Stress Responses [link]Paper   doi   link   bibtex  
ABI4: versatile activator and repressor. Wind, J. J., Peviani, A., Snel, B., Hanson, J., & Smeekens, S. C. Trends in Plant Science, 18(3): 125–132. March 2013.
ABI4: versatile activator and repressor [link]Paper   doi   link   bibtex  
How slug herbivory of juvenile hybrid willows alters chemistry, growth and subsequent susceptibility to diverse plant enemies. Orians, C. M., Fritz, R. S., Hochwender, C. G., Albrectsen, B. R., & Czesak, M. E. Annals of Botany, 112(4): 757–765. August 2013.
How slug herbivory of juvenile hybrid willows alters chemistry, growth and subsequent susceptibility to diverse plant enemies [link]Paper   doi   link   bibtex  
Aspects of nitrogen-fixing Actinobacteria , in particular free-living and symbiotic Frankia. Sellstedt, A., & Richau, K. H. FEMS Microbiology Letters, 342(2): 179–186. May 2013.
Aspects of nitrogen-fixing <i>Actinobacteria</i> , in particular free-living and symbiotic <i>Frankia</i> [link]Paper   doi   link   bibtex  
Maternal heterozygosity and progeny fitness association in an inbred Scots pine population. Abrahamsson, S., Ahlinder, J., Waldmann, P., & García-Gil, M. R. Genetica, 141(1-3): 41–50. March 2013.
Maternal heterozygosity and progeny fitness association in an inbred Scots pine population [link]Paper   doi   link   bibtex  
The effect of carbohydrates and osmoticum on storage reserve accumulation and germination of Norway spruce somatic embryos. Businge, E., Bygdell, J., Wingsle, G., Moritz, T., & Egertsdotter, U. Physiologia Plantarum, 149(2): 273–285. October 2013.
The effect of carbohydrates and osmoticum on storage reserve accumulation and germination of Norway spruce somatic embryos [link]Paper   doi   link   bibtex  
Auxin metabolism and homeostasis during plant development. Ljung, K. Development, 140(5): 943–950. March 2013.
Auxin metabolism and homeostasis during plant development [link]Paper   doi   link   bibtex   abstract  
Ecotypic variation in response to light spectra in Scots pine (Pinus sylvestris L.). Ranade, S. S., & Garcia-Gil, M. R. Tree Physiology, 33(2): 195–201. February 2013.
Ecotypic variation in response to light spectra in Scots pine (Pinus sylvestris L.) [link]Paper   doi   link   bibtex  
Reflections on substrate water and dioxygen formation. Cox, N., & Messinger, J. Biochimica et Biophysica Acta (BBA) - Bioenergetics, 1827(8-9): 1020–1030. August 2013.
Reflections on substrate water and dioxygen formation [link]Paper   doi   link   bibtex  
Refolding and Enzyme Kinetic Studies on the Ferrochelatase of the Cyanobacterium Synechocystis sp. PCC 6803. Storm, P., Tibiletti, T., Hall, M., & Funk, C. PLoS ONE, 8(2): e55569. February 2013.
Refolding and Enzyme Kinetic Studies on the Ferrochelatase of the Cyanobacterium Synechocystis sp. PCC 6803 [link]Paper   doi   link   bibtex  
Are ectomycorrhizal fungi alleviating or aggravating nitrogen limitation of tree growth in boreal forests?. Näsholm, T., Högberg, P., Franklin, O., Metcalfe, D., Keel, S. G., Campbell, C., Hurry, V., Linder, S., & Högberg, M. N. New Phytologist, 198(1): 214–221. April 2013.
Are ectomycorrhizal fungi alleviating or aggravating nitrogen limitation of tree growth in boreal forests? [link]Paper   doi   link   bibtex  
Methylome of \textlessspan style="font-variant:small-caps;"\textgreaterDN\textless/span\textgreater ase \textlessspan style="font-variant:small-caps;"\textgreaterI\textless/span\textgreater sensitive chromatin in \textlessspan style="font-variant:small-caps;"\textgreaterP\textless/span\textgreater opulus trichocarpa shoot apical meristematic cells: a simplified approach revealing characteristics of gene‐body \textlessspan style="font-variant:small-caps;"\textgreaterDNA\textless/span\textgreater methylation in open chromatin state. Lafon‐Placette, C., Faivre‐Rampant, P., Delaunay, A., Street, N., Brignolas, F., & Maury, S. New Phytologist, 197(2): 416–430. January 2013.
Methylome of \textlessspan style="font-variant:small-caps;"\textgreaterDN\textless/span\textgreater ase \textlessspan style="font-variant:small-caps;"\textgreaterI\textless/span\textgreater sensitive chromatin in <i> \textlessspan style="font-variant:small-caps;"\textgreaterP\textless/span\textgreater opulus trichocarpa </i> shoot apical meristematic cells: a simplified approach revealing characteristics of gene‐body \textlessspan style="font-variant:small-caps;"\textgreaterDNA\textless/span\textgreater methylation in open chromatin state [link]Paper   doi   link   bibtex  
Non-Photochemical Quenching Capacity in Arabidopsis thaliana Affects Herbivore Behaviour. Johansson Jänkänpää, H., Frenkel, M., Zulfugarov, I., Reichelt, M., Krieger-Liszkay, A., Mishra, Y., Gershenzon, J., Moen, J., Lee, C., & Jansson, S. PLoS ONE, 8(1): e53232. January 2013.
Non-Photochemical Quenching Capacity in Arabidopsis thaliana Affects Herbivore Behaviour [link]Paper   doi   link   bibtex  
Sulphur limitation provokes physiological and leaf proteome changes in oilseed rape that lead to perturbation of sulphur, carbon and oxidative metabolisms. D’Hooghe, P., Escamez, S., Trouverie, J., & Avice, J. BMC Plant Biology, 13(1): 23. 2013.
Sulphur limitation provokes physiological and leaf proteome changes in oilseed rape that lead to perturbation of sulphur, carbon and oxidative metabolisms [link]Paper   doi   link   bibtex  
Can thinning alleviate negative effects of fertilization on boreal forest floor vegetation?. Hedwall, P., Strengbom, J., & Nordin, A. Forest Ecology and Management, 310: 382–392. December 2013.
Can thinning alleviate negative effects of fertilization on boreal forest floor vegetation? [link]Paper   doi   link   bibtex