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  2012 (102)
Gibberellin Regulates the Arabidopsis Floral Transition through miR156-Targeted SQUAMOSA PROMOTER BINDING–LIKE Transcription Factors[W]. Yu, S., Galvão, V. C., Zhang, Y., Horrer, D., Zhang, T., Hao, Y., Feng, Y., Wang, S., Schmid, M., & Wang, J. The Plant Cell, 24(8): 3320–3332. August 2012.
Gibberellin Regulates the Arabidopsis Floral Transition through miR156-Targeted SQUAMOSA PROMOTER BINDING–LIKE Transcription Factors[W] [link]Paper   doi   link   bibtex   abstract  
The plastid redox insensitive 2 mutant of Arabidopsis is impaired in PEP activity and high light-dependent plastid redox signalling to the nucleus. Kindgren, P., Kremnev, D., Blanco, N. E., López, J. d. D. B., Fernández, A. P., Tellgren-Roth, C., Small, I., & Strand, Å. The Plant Journal, 70(2): 279–291. 2012. _eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1111/j.1365-313X.2011.04865.x
The plastid redox insensitive 2 mutant of Arabidopsis is impaired in PEP activity and high light-dependent plastid redox signalling to the nucleus [link]Paper   doi   link   bibtex   abstract  
Interplay between HEAT SHOCK PROTEIN 90 and HY5 Controls PhANG Expression in Response to the GUN5 Plastid Signal. Kindgren, P., Norén, L., Barajas López, J. d. D., Shaikhali, J., & Strand, Å. Molecular Plant, 5(4): 901–913. July 2012.
Interplay between HEAT SHOCK PROTEIN 90 and HY5 Controls PhANG Expression in Response to the GUN5 Plastid Signal [link]Paper   doi   link   bibtex   abstract  
A simple and efficient transient transformation for hybrid aspen (Populus tremula × P. tremuloides). Takata, N., & Eriksson, M. E. Plant Methods, 8(1): 30. 2012.
A simple and efficient transient transformation for hybrid aspen (Populus tremula × P. tremuloides) [link]Paper   doi   link   bibtex  
The AINTEGUMENTA LIKE1 homeotic transcription factor PtAIL1 controls the formation of adventitious root primordia in poplar. Rigal, A., Yordanov, Y. S., Perrone, I., Karlberg, A., Tisserant, E., Bellini, C., Busov, V. B., Martin, F., Kohler, A., Bhalerao, R. P., & Legué, V. Plant Physiology, 160(4): 1996–2006. December 2012.
doi   link   bibtex   abstract  
A Bistable Circuit Involving SCARECROW-RETINOBLASTOMA Integrates Cues to Inform Asymmetric Stem Cell Division. Cruz-Ramírez, A., Díaz-Triviño, S., Blilou, I., Grieneisen, V., Sozzani, R., Zamioudis, C., Miskolczi, P., Nieuwland, J., Benjamins, R., Dhonukshe, P., Caballero-Pérez, J., Horvath, B., Long, Y., Mähönen, A., Zhang, H., Xu, J., Murray, J., Benfey, P., Bakó, L., Marée, A., & Scheres, B. Cell, 150(5): 1002–1015. August 2012.
A Bistable Circuit Involving SCARECROW-RETINOBLASTOMA Integrates Cues to Inform Asymmetric Stem Cell Division [link]Paper   doi   link   bibtex  
The CRYPTOCHROME1-Dependent Response to Excess Light Is Mediated through the Transcriptional Activators ZINC FINGER PROTEIN EXPRESSED IN INFLORESCENCE MERISTEM LIKE1 and ZML2 in Arabidopsis. Shaikhali, J., de Dios Barajas-Lopéz, J., Ötvös, K., Kremnev, D., Garcia, A. S., Srivastava, V., Wingsle, G., Bakó, L., & Strand, Å. The Plant Cell, 24(7): 3009–3025. July 2012.
The CRYPTOCHROME1-Dependent Response to Excess Light Is Mediated through the Transcriptional Activators ZINC FINGER PROTEIN EXPRESSED IN INFLORESCENCE MERISTEM LIKE1 and ZML2 in <i>Arabidopsis</i> [link]Paper   doi   link   bibtex  
Arabidopsis E2FA stimulates proliferation and endocycle separately through RBR-bound and RBR-free complexes. Magyar, Z., Horváth, B., Khan, S., Mohammed, B., Henriques, R., De Veylder, L., Bakó, L., Scheres, B., & Bögre, L. The EMBO Journal, 31(6): 1480–1493. March 2012. Publisher: John Wiley & Sons, Ltd
Arabidopsis E2FA stimulates proliferation and endocycle separately through RBR-bound and RBR-free complexes [link]Paper   doi   link   bibtex   abstract  
The diversity and identification of eulophid parasitic wasps (Hymenoptera: Chalcidoidea: Eulophidae) on Phyllocnistis labyrinthella (Lepidoptera: Gracillariidae) from Västerbotten, Sweden. Albrectsen, B., & Hansson, C. , 133. January 2012.
link   bibtex   abstract  
Thermoluminescence. Sane, P. V., Ivanov, A. G., Öquist, G., & Hüner, N. P. A. In Eaton-Rye, J. J., Tripathy, B. C., & Sharkey, T. D., editor(s), Photosynthesis: Plastid Biology, Energy Conversion and Carbon Assimilation, of Advances in Photosynthesis and Respiration, pages 445–474. Springer Netherlands, Dordrecht, 2012.
Thermoluminescence [link]Paper   doi   link   bibtex   abstract  
Global regulatory burden for field testing of genetically modified trees. Viswanath, V., Albrectsen, B. R., & Strauss, S. H. Tree Genetics & Genomes, 8(2): 221–226. April 2012.
Global regulatory burden for field testing of genetically modified trees [link]Paper   doi   link   bibtex  
Subterranean space exploration: the development of root system architecture. Jones, B., & Ljung, K. Current Opinion in Plant Biology, 15(1): 97–102. February 2012.
Subterranean space exploration: the development of root system architecture [link]Paper   doi   link   bibtex  
Matrix metalloproteinases in plants: a brief overview. Marino, G., & Funk, C. Physiologia Plantarum, 145(1): 196–202. May 2012.
Matrix metalloproteinases in plants: a brief overview [link]Paper   doi   link   bibtex  
The patterning of epidermal hairs in Arabidopsis—updated. Grebe, M. Current Opinion in Plant Biology, 15(1): 31–37. February 2012.
The patterning of epidermal hairs in Arabidopsis—updated [link]Paper   doi   link   bibtex  
Tensional stress generation in gelatinous fibres: a review and possible mechanism based on cell-wall structure and composition. Mellerowicz, E. J., & Gorshkova, T. A. Journal of Experimental Botany, 63(2): 551–565. January 2012.
Tensional stress generation in gelatinous fibres: a review and possible mechanism based on cell-wall structure and composition [link]Paper   doi   link   bibtex  
Genetic parameters and provenance variation of Pinus radiata D. Don. ‘Eldridge collection’ in Australia 2: wood properties. Gapare, W. J., Ivković, M., Dillon, S. K., Chen, F., Evans, R., & Wu, H. X. Tree Genetics & Genomes, 8(4): 895–910. August 2012.
Genetic parameters and provenance variation of Pinus radiata D. Don. ‘Eldridge collection’ in Australia 2: wood properties [link]Paper   doi   link   bibtex  
Simultaneous estimation of multiple quantitative trait loci and growth curve parameters through hierarchical Bayesian modeling. Sillanpää, M J, Pikkuhookana, P, Abrahamsson, S, Knürr, T, Fries, A, Lerceteau, E, Waldmann, P, & García-Gil, M R Heredity, 108(2): 134–146. February 2012.
Simultaneous estimation of multiple quantitative trait loci and growth curve parameters through hierarchical Bayesian modeling [link]Paper   doi   link   bibtex  
Photosystem II, a growing complex: Updates on newly discovered components and low molecular mass proteins. Shi, L., Hall, M., Funk, C., & Schröder, W. P. Biochimica et Biophysica Acta (BBA) - Bioenergetics, 1817(1): 13–25. January 2012.
Photosystem II, a growing complex: Updates on newly discovered components and low molecular mass proteins [link]Paper   doi   link   bibtex  
Pair-wise multicomparison and OPLS analyses of cold-acclimation phases in Siberian spruce. Shiryaeva, L., Antti, H., Schröder, W. P., Strimbeck, R., & Shiriaev, A. S. Metabolomics, 8(S1): 123–130. June 2012.
Pair-wise multicomparison and OPLS analyses of cold-acclimation phases in Siberian spruce [link]Paper   doi   link   bibtex  
Characterization of Bioethanol Production from Hexoses and Xylose by the White Rot Fungus Trametes versicolor. Kudahettige, R. L., Holmgren, M., Imerzeel, P., & Sellstedt, A. BioEnergy Research, 5(2): 277–285. June 2012.
Characterization of Bioethanol Production from Hexoses and Xylose by the White Rot Fungus Trametes versicolor [link]Paper   doi   link   bibtex  
Hydrogen yield from a hydrogenase in Frankia R43 at different levels of the carbon source propionate. Chatchai, K., Rasika Lasanthi, K., Lars, R., & Anita, S. Journal of Environmental Management, 95: S365–S368. March 2012.
Hydrogen yield from a hydrogenase in Frankia R43 at different levels of the carbon source propionate [link]Paper   doi   link   bibtex  
Synteny-based mapping-by-sequencing enabled by targeted enrichment. Galvão, V. C., Nordström, K. J. V., Lanz, C., Sulz, P., Mathieu, J., Posé, D., Schmid, M., Weigel, D., & Schneeberger, K. The Plant Journal: For Cell and Molecular Biology, 71(3): 517–526. August 2012.
doi   link   bibtex   abstract  
Paramutation-Like Interaction of T-DNA Loci in Arabidopsis. Xue, W., Ruprecht, C., Street, N., Hematy, K., Chang, C., Frommer, W. B., Persson, S., & Niittylä, T. PLoS ONE, 7(12): e51651. December 2012.
Paramutation-Like Interaction of T-DNA Loci in Arabidopsis [link]Paper   doi   link   bibtex  
Use of the Foot-and-Mouth Disease Virus 2A Peptide Co-Expression System to Study Intracellular Protein Trafficking in Arabidopsis. Burén, S., Ortega-Villasante, C., Ötvös, K., Samuelsson, G., Bakó, L., & Villarejo, A. PLoS ONE, 7(12): e51973. December 2012.
Use of the Foot-and-Mouth Disease Virus 2A Peptide Co-Expression System to Study Intracellular Protein Trafficking in Arabidopsis [link]Paper   doi   link   bibtex  
Effects of interspecific recombination on functional traits in trees revealed by metabolomics and genotyping-by-resequencing. Caseys, C., Glauser, G., Stölting, K. N., Christe, C., Albrectsen, B. R., & Lexer, C. Plant Ecology & Diversity, 5(4): 457–471. December 2012.
Effects of interspecific recombination on functional traits in trees revealed by metabolomics and genotyping-by-resequencing [link]Paper   doi   link   bibtex  
SCFTIR1/AFB-auxin signalling regulates PIN vacuolar trafficking and auxin fluxes during root gravitropism. Baster, P., Robert, S., Kleine-Vehn, J., Vanneste, S., Kania, U., Grunewald, W., De Rybel, B., Beeckman, T., & Friml, J. The EMBO Journal, 32(2): 260–274. December 2012.
SCFTIR1/AFB-auxin signalling regulates PIN vacuolar trafficking and auxin fluxes during root gravitropism [link]Paper   doi   link   bibtex  
Phosphorylation Controls the Localization and Activation of the Lumenal Carbonic Anhydrase in Chlamydomonas reinhardtii. Blanco-Rivero, A., Shutova, T., Román, M. J., Villarejo, A., & Martinez, F. PLoS ONE, 7(11): e49063. November 2012.
Phosphorylation Controls the Localization and Activation of the Lumenal Carbonic Anhydrase in Chlamydomonas reinhardtii [link]Paper   doi   link   bibtex  
Quantifying and monitoring functional photosystem II and the stoichiometry of the two photosystems in leaf segments: approaches and approximations. Chow, W. S., Fan, D., Oguchi, R., Jia, H., Losciale, P., Park, Y., He, J., Öquist, G., Shen, Y., & Anderson, J. M. Photosynthesis Research, 113(1-3): 63–74. September 2012.
Quantifying and monitoring functional photosystem II and the stoichiometry of the two photosystems in leaf segments: approaches and approximations [link]Paper   doi   link   bibtex  
Planar polarity, tissue polarity and planar morphogenesis in plants. Nakamura, M., Kiefer, C. S, & Grebe, M. Current Opinion in Plant Biology, 15(6): 593–600. December 2012.
Planar polarity, tissue polarity and planar morphogenesis in plants [link]Paper   doi   link   bibtex  
Constitutive expression of a fungal glucuronoyl esterase in Arabidopsis reveals altered cell wall composition and structure: Transgenic expression of PcGCE in Arabidopsis. Tsai, A. Y., Canam, T., Gorzsás, A., Mellerowicz, E. J., Campbell, M. M., & Master, E. R. Plant Biotechnology Journal, 10(9): 1077–1087. December 2012.
Constitutive expression of a fungal glucuronoyl esterase in Arabidopsis reveals altered cell wall composition and structure: Transgenic expression of PcGCE in Arabidopsis [link]Paper   doi   link   bibtex  
Hierarchical structure of juvenile hybrid aspen xylem revealed using X-ray scattering and microtomography. Svedström, K., Lucenius, J., Van den Bulcke, J., Van Loo, D., Immerzeel, P., Suuronen, J., Brabant, L., Van Acker, J., Saranpää, P., Fagerstedt, K., Mellerowicz, E., & Serimaa, R. Trees, 26(6): 1793–1804. December 2012.
Hierarchical structure of juvenile hybrid aspen xylem revealed using X-ray scattering and microtomography [link]Paper   doi   link   bibtex  
Spatiotemporal Regulation of Lateral Root Organogenesis in Arabidopsis by Cytokinin. Bielach, A., Podlešáková, K., Marhavý, P., Duclercq, J., Cuesta, C., Müller, B., Grunewald, W., Tarkowski, P., & Benková, E. The Plant Cell, 24(10): 3967–3981. October 2012.
Spatiotemporal Regulation of Lateral Root Organogenesis in <i>Arabidopsis</i> by Cytokinin [link]Paper   doi   link   bibtex  
Phylogeography of Quercus variabilis Based on Chloroplast DNA Sequence in East Asia: Multiple Glacial Refugia and Mainland-Migrated Island Populations. Chen, D., Zhang, X., Kang, H., Sun, X., Yin, S., Du, H., Yamanaka, N., Gapare, W., Wu, H. X., & Liu, C. PLoS ONE, 7(10): e47268. October 2012.
Phylogeography of Quercus variabilis Based on Chloroplast DNA Sequence in East Asia: Multiple Glacial Refugia and Mainland-Migrated Island Populations [link]Paper   doi   link   bibtex  
Plant Fiber Formation: State of the Art, Recent and Expected Progress, and Open Questions. Gorshkova, T., Brutch, N., Chabbert, B., Deyholos, M., Hayashi, T., Lev-Yadun, S., Mellerowicz, E. J., Morvan, C., Neutelings, G., & Pilate, G. Critical Reviews in Plant Sciences, 31(3): 201–228. May 2012.
Plant Fiber Formation: State of the Art, Recent and Expected Progress, and Open Questions [link]Paper   doi   link   bibtex  
Linking photoreceptor excitation to changes in plant architecture. Li, L., Ljung, K., Breton, G., Schmitz, R. J., Pruneda-Paz, J., Cowing-Zitron, C., Cole, B. J., Ivans, L. J., Pedmale, U. V., Jung, H., Ecker, J. R., Kay, S. A., & Chory, J. Genes & Development, 26(8): 785–790. April 2012.
Linking photoreceptor excitation to changes in plant architecture [link]Paper   doi   link   bibtex  
An Endogenous Carbon-Sensing Pathway Triggers Increased Auxin Flux and Hypocotyl Elongation. Lilley, J. L. S., Gee, C. W., Sairanen, I., Ljung, K., & Nemhauser, J. L. Plant Physiology, 160(4): 2261–2270. December 2012.
An Endogenous Carbon-Sensing Pathway Triggers Increased Auxin Flux and Hypocotyl Elongation [link]Paper   doi   link   bibtex   abstract  
The Genetic Dissection of a Short-Term Response to Low CO2 Supports the Possibility for Peroxide-Mediated Decarboxylation of Photorespiratory Intermediates in the Peroxisome. Keech, O., Zhou, W., Fenske, R., Colas-des-Francs-Small, C., Bussell, J. D., Badger, M. R., & Smith, S. M. Molecular Plant, 5(6): 1413–1416. November 2012.
The Genetic Dissection of a Short-Term Response to Low CO2 Supports the Possibility for Peroxide-Mediated Decarboxylation of Photorespiratory Intermediates in the Peroxisome [link]Paper   doi   link   bibtex  
Implications of alternative electron sinks in increased resistance of PSII and PSI photochemistry to high light stress in cold-acclimated Arabidopsis thaliana. Ivanov, A. G., Rosso, D., Savitch, L. V., Stachula, P., Rosembert, M., Oquist, G., Hurry, V., & Hüner, N. P. A. Photosynthesis Research, 113(1-3): 191–206. September 2012.
Implications of alternative electron sinks in increased resistance of PSII and PSI photochemistry to high light stress in cold-acclimated Arabidopsis thaliana [link]Paper   doi   link   bibtex  
The search for new chlorophyll-binding proteins in the cyanobacterium Synechocystis sp. PCC 6803. Cheregi, O., Vermaas, W., & Funk, C. Journal of Biotechnology, 162(1): 124–133. November 2012.
The search for new chlorophyll-binding proteins in the cyanobacterium Synechocystis sp. PCC 6803 [link]Paper   doi   link   bibtex  
Fruit Growth in Arabidopsis Occurs via DELLA-Dependent and DELLA-Independent Gibberellin Responses. Fuentes, S., Ljung, K., Sorefan, K., Alvey, E., Harberd, N. P., & Østergaard, L. The Plant Cell, 24(10): 3982–3996. October 2012.
Fruit Growth in <i>Arabidopsis</i> Occurs via DELLA-Dependent and DELLA-Independent Gibberellin Responses [link]Paper   doi   link   bibtex  
Analysis of conifer FLOWERING LOCUS T / TERMINAL FLOWER1 ‐like genes provides evidence for dramatic biochemical evolution in the angiosperm \textlessspan style="font-variant:small-caps;"\textgreater FT \textless/span\textgreater lineage. Klintenäs, M., Pin, P. A., Benlloch, R., Ingvarsson, P. K., & Nilsson, O. New Phytologist, 196(4): 1260–1273. December 2012.
Analysis of conifer <i>FLOWERING LOCUS T</i> / <i>TERMINAL FLOWER1</i> ‐like genes provides evidence for dramatic biochemical evolution in the angiosperm \textlessspan style="font-variant:small-caps;"\textgreater <i>FT</i> \textless/span\textgreater lineage [link]Paper   doi   link   bibtex  
Degradation of PsbO by the Deg Protease HhoA Is Thioredoxin Dependent. Roberts, I. N., Lam, X. T., Miranda, H., Kieselbach, T., & Funk, C. PLoS ONE, 7(9): e45713. September 2012.
Degradation of PsbO by the Deg Protease HhoA Is Thioredoxin Dependent [link]Paper   doi   link   bibtex  
Detection of the Water-Binding Sites of the Oxygen-Evolving Complex of Photosystem II Using W-Band $^{\textrm{17}}$ O Electron–Electron Double Resonance-Detected NMR Spectroscopy. Rapatskiy, L., Cox, N., Savitsky, A., Ames, W. M., Sander, J., Nowaczyk, M. M., Rögner, M., Boussac, A., Neese, F., Messinger, J., & Lubitz, W. Journal of the American Chemical Society, 134(40): 16619–16634. October 2012.
Detection of the Water-Binding Sites of the Oxygen-Evolving Complex of Photosystem II Using W-Band $^{\textrm{17}}$ O Electron–Electron Double Resonance-Detected NMR Spectroscopy [link]Paper   doi   link   bibtex  
Mass spectrometric identification of new minor indigoids in shellfish purple dye from Hexaplex trunculus. Surowiec, I., Nowik, W., & Moritz, T. Dyes and Pigments, 94(2): 363–369. August 2012.
Mass spectrometric identification of new minor indigoids in shellfish purple dye from Hexaplex trunculus [link]Paper   doi   link   bibtex  
Improved gap size estimation for scaffolding algorithms. Sahlin, K., Street, N., Lundeberg, J., & Arvestad, L. Bioinformatics, 28(17): 2215–2222. September 2012.
Improved gap size estimation for scaffolding algorithms [link]Paper   doi   link   bibtex  
Effects of oestrogen and testosterone therapy on serum metabolites in postmenopausal women. Zang, H., Moritz, T., Norstedt, G., Hirschberg, A. L., & Tollet-Egnell, P. Clinical Endocrinology, 77(2): 288–295. August 2012.
Effects of oestrogen and testosterone therapy on serum metabolites in postmenopausal women [link]Paper   doi   link   bibtex  
Auxin Controls Arabidopsis Adventitious Root Initiation by Regulating Jasmonic Acid Homeostasis. Gutierrez, L., Mongelard, G., Floková, K., Păcurar, D. I., Novák, O., Staswick, P., Kowalczyk, M., Păcurar, M., Demailly, H., Geiss, G., & Bellini, C. The Plant Cell, 24(6): 2515–2527. June 2012.
Auxin Controls Arabidopsis Adventitious Root Initiation by Regulating Jasmonic Acid Homeostasis [link]Paper   doi   link   bibtex   abstract  
Genetic approach towards the identification of auxin–cytokinin crosstalk components involved in root development. Bielach, A., Duclercq, J., Marhavý, P., & Benková, E. Philosophical Transactions of the Royal Society B: Biological Sciences, 367(1595): 1469–1478. June 2012. Publisher: Royal Society
Genetic approach towards the identification of auxin–cytokinin crosstalk components involved in root development [link]Paper   doi   link   bibtex   abstract  
Identification of putative candidate genes for juvenile wood density in Pinus radiata. Li, X., Wu, H. X., & Southerton, S. G. Tree Physiology, 32(8): 1046–1057. August 2012.
Identification of putative candidate genes for juvenile wood density in Pinus radiata [link]Paper   doi   link   bibtex  
PROTON GRADIENT REGULATION5 Is Essential for Proper Acclimation of Arabidopsis Photosystem I to Naturally and Artificially Fluctuating Light Conditions. Suorsa, M., Järvi, S., Grieco, M., Nurmi, M., Pietrzykowska, M., Rantala, M., Kangasjärvi, S., Paakkarinen, V., Tikkanen, M., Jansson, S., & Aro, E. The Plant Cell, 24(7): 2934–2948. July 2012.
PROTON GRADIENT REGULATION5 Is Essential for Proper Acclimation of <i>Arabidopsis</i> Photosystem I to Naturally and Artificially Fluctuating Light Conditions [link]Paper   doi   link   bibtex  
Metabolic Responses to Change in Disease Activity during Tumor Necrosis Factor Inhibition in Patients with Rheumatoid Arthritis. Madsen, R., Rantapää-Dahlqvist, S., Lundstedt, T., Moritz, T., & Trygg, J. Journal of Proteome Research, 11(7): 3796–3804. July 2012.
Metabolic Responses to Change in Disease Activity during Tumor Necrosis Factor Inhibition in Patients with Rheumatoid Arthritis [link]Paper   doi   link   bibtex  
Tissue-specific profiling of the Arabidopsis thaliana auxin metabolome: Auxin metabolite profiling in Arabidopsis. Novák, O., Hényková, E., Sairanen, I., Kowalczyk, M., Pospíšil, T., & Ljung, K. The Plant Journal, 72(3): 523–536. November 2012.
Tissue-specific profiling of the <i>Arabidopsis thaliana</i> auxin metabolome: <i>Auxin metabolite profiling in</i> Arabidopsis [link]Paper   doi   link   bibtex  
Redox-mediated Mechanisms Regulate DNA Binding Activity of the G-group of Basic Region Leucine Zipper (bZIP) Transcription Factors in Arabidopsis. Shaikhali, J., Norén, L., de Dios Barajas-López, J., Srivastava, V., König, J., Sauer, U. H., Wingsle, G., Dietz, K., & Strand, Å. Journal of Biological Chemistry, 287(33): 27510–27525. August 2012.
Redox-mediated Mechanisms Regulate DNA Binding Activity of the G-group of Basic Region Leucine Zipper (bZIP) Transcription Factors in Arabidopsis [link]Paper   doi   link   bibtex  
The multifaceted roles of FLOWERING LOCUS T in plant development: FT, a multifunctional protein. Pin, P. A., & Nilsson, O. Plant, Cell & Environment, 35(10): 1742–1755. October 2012.
The multifaceted roles of FLOWERING LOCUS T in plant development: FT, a multifunctional protein [link]Paper   doi   link   bibtex  
The obscure events contributing to the evolution of an incipient sex chromosome in Populus: a retrospective working hypothesis. Tuskan, G. A., DiFazio, S., Faivre-Rampant, P., Gaudet, M., Harfouche, A., Jorge, V., Labbé, J. L., Ranjan, P., Sabatti, M., Slavov, G., Street, N., Tschaplinski, T. J., & Yin, T. Tree Genetics & Genomes, 8(3): 559–571. June 2012.
The obscure events contributing to the evolution of an incipient sex chromosome in Populus: a retrospective working hypothesis [link]Paper   doi   link   bibtex   abstract  
The dynamic nature of bud dormancy in trees: environmental control and molecular mechanisms: Bud dormancy in trees. Cooke, J. E. K., Eriksson, M. E., & Junttila, O. Plant, Cell & Environment, 35(10): 1707–1728. October 2012.
The dynamic nature of bud dormancy in trees: environmental control and molecular mechanisms: Bud dormancy in trees [link]Paper   doi   link   bibtex  
Atypical Thioredoxins in Poplar: The Glutathione-Dependent Thioredoxin-Like 2.1 Supports the Activity of Target Enzymes Possessing a Single Redox Active Cysteine. Chibani, K., Tarrago, L., Gualberto, J. M., Wingsle, G., Rey, P., Jacquot, J., & Rouhier, N. Plant Physiology, 159(2): 592–605. June 2012.
Atypical Thioredoxins in Poplar: The Glutathione-Dependent Thioredoxin-Like 2.1 Supports the Activity of Target Enzymes Possessing a Single Redox Active Cysteine [link]Paper   doi   link   bibtex   abstract  
ABP1 and ROP6 GTPase Signaling Regulate Clathrin-Mediated Endocytosis in Arabidopsis Roots. Chen, X., Naramoto, S., Robert, S., Tejos, R., Löfke, C., Lin, D., Yang, Z., & Friml, J. Current Biology, 22(14): 1326–1332. July 2012.
ABP1 and ROP6 GTPase Signaling Regulate Clathrin-Mediated Endocytosis in Arabidopsis Roots [link]Paper   doi   link   bibtex  
The Role of a Pseudo-Response Regulator Gene in Life Cycle Adaptation and Domestication of Beet. Pin, P., Zhang, W., Vogt, S., Dally, N., Büttner, B., Schulze-Buxloh, G., Jelly, N., Chia, T., Mutasa-Göttgens, E., Dohm, J., Himmelbauer, H., Weisshaar, B., Kraus, J., Gielen, J., Lommel, M., Weyens, G., Wahl, B., Schechert, A., Nilsson, O., Jung, C., Kraft, T., & Müller, A. Current Biology, 22(12): 1095–1101. June 2012.
The Role of a Pseudo-Response Regulator Gene in Life Cycle Adaptation and Domestication of Beet [link]Paper   doi   link   bibtex  
Genetic parameters, genetic gain and correlated responses in growth, fibre dimensions and wood density in a Scots pine breeding population. Fries, A. Annals of Forest Science, 69(7): 783–794. October 2012.
Genetic parameters, genetic gain and correlated responses in growth, fibre dimensions and wood density in a Scots pine breeding population [link]Paper   doi   link   bibtex  
Genetic Variation in Functional Traits Influences Arthropod Community Composition in Aspen (Populus tremula L.). Robinson, K. M., Ingvarsson, P. K., Jansson, S., & Albrectsen, B. R. PLoS ONE, 7(5): e37679. May 2012.
Genetic Variation in Functional Traits Influences Arthropod Community Composition in Aspen (Populus tremula L.) [link]Paper   doi   link   bibtex  
Multivariate curve resolution provides a high-throughput data processing pipeline for pyrolysis-gas chromatography/mass spectrometry. Gerber, L., Eliasson, M., Trygg, J., Moritz, T., & Sundberg, B. Journal of Analytical and Applied Pyrolysis, 95: 95–100. May 2012.
Multivariate curve resolution provides a high-throughput data processing pipeline for pyrolysis-gas chromatography/mass spectrometry [link]Paper   doi   link   bibtex  
The below‐ground perspective of forest plants: soil provides mainly organic nitrogen for plants and mycorrhizal fungi. Inselsbacher, E., & Näsholm, T. New Phytologist, 195(2): 329–334. July 2012.
The below‐ground perspective of forest plants: soil provides mainly organic nitrogen for plants and mycorrhizal fungi [link]Paper   doi   link   bibtex  
Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling: PIF4 and PIF5 control auxin signaling. Hornitschek, P., Kohnen, M. V., Lorrain, S., Rougemont, J., Ljung, K., López-Vidriero, I., Franco-Zorrilla, J. M., Solano, R., Trevisan, M., Pradervand, S., Xenarios, I., & Fankhauser, C. The Plant Journal, 71(5): 699–711. September 2012.
Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling: PIF4 and PIF5 control auxin signaling [link]Paper   doi   link   bibtex  
Senescence-associated proteases in plants. Roberts, I. N., Caputo, C., Criado, M. V., & Funk, C. Physiologia Plantarum, 145(1): 130–139. May 2012.
Senescence-associated proteases in plants [link]Paper   doi   link   bibtex  
FtsH proteases located in the plant chloroplast. Wagner, R., Aigner, H., & Funk, C. Physiologia Plantarum, 145(1): 203–214. May 2012.
FtsH proteases located in the plant chloroplast [link]Paper   doi   link   bibtex  
Comparative Nucleotide Diversity Across North American and European Populus Species. Ismail, M., Soolanayakanahally, R. Y., Ingvarsson, P. K., Guy, R. D., Jansson, S., Silim, S. N., & El-Kassaby, Y. A. Journal of Molecular Evolution, 74(5-6): 257–272. June 2012.
Comparative Nucleotide Diversity Across North American and European Populus Species [link]Paper   doi   link   bibtex  
Dynamic protein composition of Arabidopsis thaliana cytosolic ribosomes in response to sucrose feeding as revealed by label free MSE proteomics. Hummel, M., Cordewener, J. H. G., de Groot, J. C. M., Smeekens, S., America, A. H. P., & Hanson, J. PROTEOMICS, 12(7): 1024–1038. April 2012.
Dynamic protein composition of Arabidopsis thaliana cytosolic ribosomes in response to sucrose feeding as revealed by label free MSE proteomics [link]Paper   doi   link   bibtex  
Physical disturbance determines effects from nitrogen addition on ground vegetation in boreal coniferous forests. Strengbom, J., & Nordin, A. Journal of Vegetation Science, 23(2): 361–371. April 2012.
Physical disturbance determines effects from nitrogen addition on ground vegetation in boreal coniferous forests [link]Paper   doi   link   bibtex  
Altered Metabolic Signature in Pre-Diabetic NOD Mice. Madsen, R., Banday, V. S., Moritz, T., Trygg, J., & Lejon, K. PLoS ONE, 7(4): e35445. April 2012.
Altered Metabolic Signature in Pre-Diabetic NOD Mice [link]Paper   doi   link   bibtex  
Substrate kinetics and substrate effects on the quaternary structure of barley UDP-glucose pyrophosphorylase. Decker, D., Meng, M., Gornicka, A., Hofer, A., Wilczynska, M., & Kleczkowski, L. A. Phytochemistry, 79: 39–45. July 2012.
Substrate kinetics and substrate effects on the quaternary structure of barley UDP-glucose pyrophosphorylase [link]Paper   doi   link   bibtex  
Physical fitness level is reflected by alterations in the human plasma metabolome. Chorell, E., Svensson, M. B., Moritz, T., & Antti, H. Molecular BioSystems, 8(4): 1187. 2012.
Physical fitness level is reflected by alterations in the human plasma metabolome [link]Paper   doi   link   bibtex  
Plant proteases – from detection to function. Pesquet, E. Physiologia Plantarum, 145(1): 1–4. 2012. _eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1111/j.1399-3054.2012.01614.x
Plant proteases – from detection to function [link]Paper   doi   link   bibtex  
The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence element. Dinh, T. T., Girke, T., Liu, X., Yant, L., Schmid, M., & Chen, X. Development (Cambridge, England), 139(11): 1978–1986. June 2012.
doi   link   bibtex   abstract  
The end of innocence: flowering networks explode in complexity. Posé, D., Yant, L., & Schmid, M. Current Opinion in Plant Biology, 15(1): 45–50. February 2012.
doi   link   bibtex   abstract  
Characterization of SOC1's central role in flowering by the identification of its upstream and downstream regulators. Immink, R. G. H., Posé, D., Ferrario, S., Ott, F., Kaufmann, K., Valentim, F. L., de Folter, S., van der Wal, F., van Dijk, A. D. J., Schmid, M., & Angenent, G. C. Plant Physiology, 160(1): 433–449. September 2012.
doi   link   bibtex   abstract  
Root gravitropism is regulated by a transient lateral auxin gradient controlled by a tipping-point mechanism. Band, L. R., Wells, D. M., Larrieu, A., Sun, J., Middleton, A. M., French, A. P., Brunoud, G., Sato, E. M., Wilson, M. H., Péret, B., Oliva, M., Swarup, R., Sairanen, I., Parry, G., Ljung, K., Beeckman, T., Garibaldi, J. M., Estelle, M., Owen, M. R., Vissenberg, K., Hodgman, T. C., Pridmore, T. P., King, J. R., Vernoux, T., & Bennett, M. J. Proceedings of the National Academy of Sciences, 109(12): 4668–4673. March 2012. Publisher: National Academy of Sciences Section: Biological Sciences
Root gravitropism is regulated by a transient lateral auxin gradient controlled by a tipping-point mechanism [link]Paper   doi   link   bibtex   abstract  
The Arabidopsis thaliana transcriptional activator STYLISH1 regulates genes affecting stamen development, cell expansion and timing of flowering. Ståldal, V., Cierlik, I., Chen, S., Landberg, K., Baylis, T., Myrenås, M., Sundström, J. F., Eklund, D. M., Ljung, K., & Sundberg, E. Plant Molecular Biology, 78(6): 545–559. April 2012.
The Arabidopsis thaliana transcriptional activator STYLISH1 regulates genes affecting stamen development, cell expansion and timing of flowering [link]Paper   doi   link   bibtex  
Metabolic profiling reveals metabolic shifts in Arabidopsis plants grown under different light conditions: Metabolic profiling under different light regime. Jänkänpää, H. J., Mishra, Y., Schröder, W. P., & Jansson, S. Plant, Cell & Environment, 35(10): 1824–1836. October 2012.
Metabolic profiling reveals metabolic shifts in Arabidopsis plants grown under different light conditions: Metabolic profiling under different light regime [link]Paper   doi   link   bibtex  
Plant proteases - from detection to function. Pesquet, E. Physiologia Plantarum, 145(1): 1–4. May 2012.
Plant proteases - from detection to function [link]Paper   doi   link   bibtex  
Restricted capacity for PSI-dependent cyclic electron flow in ΔpetE mutant compromises the ability for acclimation to iron stress in Synechococcus sp. PCC 7942 cells. Ivanov, A., Sane, P., Simidjiev, I., Park, Y., Huner, N., & Öquist, G. Biochimica et Biophysica Acta (BBA) - Bioenergetics, 1817(8): 1277–1284. August 2012.
Restricted capacity for PSI-dependent cyclic electron flow in ΔpetE mutant compromises the ability for acclimation to iron stress in Synechococcus sp. PCC 7942 cells [link]Paper   doi   link   bibtex  
Spatial control of flowering by DELLA proteins in Arabidopsis thaliana. Galvão, V. C., Horrer, D., Küttner, F., & Schmid, M. Development (Cambridge, England), 139(21): 4072–4082. November 2012.
doi   link   bibtex   abstract  
Genome-wide binding-site analysis of REVOLUTA reveals a link between leaf patterning and light-mediated growth responses. Brandt, R., Salla-Martret, M., Bou-Torrent, J., Musielak, T., Stahl, M., Lanz, C., Ott, F., Schmid, M., Greb, T., Schwarz, M., Choi, S., Barton, M. K., Reinhart, B. J., Liu, T., Quint, M., Palauqui, J., Martínez-García, J. F., & Wenkel, S. The Plant Journal: For Cell and Molecular Biology, 72(1): 31–42. October 2012.
doi   link   bibtex   abstract  
Allocation of carbon to fine root compounds and their residence times in a boreal forest depend on root size class and season. Keel, S. G., Campbell, C. D., Högberg, M. N., Richter, A., Wild, B., Zhou, X., Hurry, V., Linder, S., Näsholm, T., & Högberg, P. New Phytologist, 194(4): 972–981. June 2012.
Allocation of carbon to fine root compounds and their residence times in a boreal forest depend on root size class and season [link]Paper   doi   link   bibtex  
Geographical structure and adaptive population differentiation in herbivore defence genes in European aspen ( Populus tremula L., Salicaceae): POPULATION STRUCTURE IN POPULUS DEFENCE GENES. Bernhardsson, C., & Ingvarsson, P. K. Molecular Ecology, 21(9): 2197–2207. May 2012.
Geographical structure and adaptive population differentiation in herbivore defence genes in European aspen ( <i>Populus tremula</i> L., Salicaceae): POPULATION STRUCTURE IN <i>POPULUS</i> DEFENCE GENES [link]Paper   doi   link   bibtex  
Analysis of the Developmental Roles of the Arabidopsis Gibberellin 20-Oxidases Demonstrates That GA20ox1 , -2 , and -3 Are the Dominant Paralogs. Plackett, A. R., Powers, S. J., Fernandez-Garcia, N., Urbanova, T., Takebayashi, Y., Seo, M., Jikumaru, Y., Benlloch, R., Nilsson, O., Ruiz-Rivero, O., Phillips, A. L., Wilson, Z. A., Thomas, S. G., & Hedden, P. The Plant Cell, 24(3): 941–960. March 2012.
Analysis of the Developmental Roles of the <i>Arabidopsis</i> Gibberellin 20-Oxidases Demonstrates That <i>GA20ox1</i> , <i>-2</i> , and <i>-3</i> Are the Dominant Paralogs [link]Paper   doi   link   bibtex  
ALS patients with mutations in the SOD1 gene have an unique metabolomic profile in the cerebrospinal fluid compared with ALS patients without mutations. Wuolikainen, A., Andersen, P. M., Moritz, T., Marklund, S. L., & Antti, H. Molecular Genetics and Metabolism, 105(3): 472–478. March 2012.
ALS patients with mutations in the SOD1 gene have an unique metabolomic profile in the cerebrospinal fluid compared with ALS patients without mutations [link]Paper   doi   link   bibtex  
Hydroperoxide and peroxynitrite reductase activity of poplar thioredoxin-dependent glutathione peroxidase 5: kinetics, catalytic mechanism and oxidative inactivation. Selles, B., Hugo, M., Trujillo, M., Srivastava, V., Wingsle, G., Jacquot, J., Radi, R., & Rouhier, N. Biochemical Journal, 442(2): 369–380. March 2012.
Hydroperoxide and peroxynitrite reductase activity of poplar thioredoxin-dependent glutathione peroxidase 5: kinetics, catalytic mechanism and oxidative inactivation [link]Paper   doi   link   bibtex   abstract  
Inheritance of height growth and autumn cold hardiness based on two generations of full-sib and half-sib families of Pinus sylvestris. Abrahamsson, S., Nilsson, J., Wu, H., García Gil, M. R., & Andersson, B. Scandinavian Journal of Forest Research, 27(5): 405–413. July 2012.
Inheritance of height growth and autumn cold hardiness based on two generations of full-sib and half-sib families of <i>Pinus sylvestris</i> [link]Paper   doi   link   bibtex  
The non-DNA-binding bHLH transcription factor PRE3/bHLH135/ATBS1/TMO7 is involved in the regulation of light signaling pathway in Arabidopsis. Castelain, M., Le Hir, R., & Bellini, C. Physiologia Plantarum, 145(3): 450–460. July 2012.
The non-DNA-binding bHLH transcription factor PRE3/bHLH135/ATBS1/TMO7 is involved in the regulation of light signaling pathway in Arabidopsis [link]Paper   doi   link   bibtex  
Effects of male fecundity, interindividual distance and anisotropic pollen dispersal on mating success in a Scots pine (Pinus sylvestris) seed orchard. Torimaru, T, Wennström, U, Lindgren, D, & Wang, X. Heredity, 108(3): 312–321. March 2012.
Effects of male fecundity, interindividual distance and anisotropic pollen dispersal on mating success in a Scots pine (Pinus sylvestris) seed orchard [link]Paper   doi   link   bibtex  
Metabolite profiling reveals clear metabolic changes during somatic embryo development of Norway spruce (Picea abies). Businge, E., Brackmann, K., Moritz, T., & Egertsdotter, U. Tree Physiology, 32(2): 232–244. February 2012.
Metabolite profiling reveals clear metabolic changes during somatic embryo development of Norway spruce (Picea abies) [link]Paper   doi   link   bibtex  
Development of a gas chromatography/mass spectrometry based metabolomics protocol by means of statistical experimental design. Danielsson, A. P. H., Moritz, T., Mulder, H., & Spégel, P. Metabolomics, 8(1): 50–63. February 2012.
Development of a gas chromatography/mass spectrometry based metabolomics protocol by means of statistical experimental design [link]Paper   doi   link   bibtex  
Xylem cell death: emerging understanding of regulation and function. Bollhoner, B., Prestele, J., & Tuominen, H. Journal of Experimental Botany, 63(3): 1081–1094. February 2012.
Xylem cell death: emerging understanding of regulation and function [link]Paper   doi   link   bibtex  
Arabidopsis plants grown in the field and climate chambers significantly differ in leaf morphology and photosystem components. Mishra, Y., Johansson Jänkänpää, H., Kiss, A. Z, Funk, C., Schröder, W. P, & Jansson, S. BMC Plant Biology, 12(1): 6. 2012.
Arabidopsis plants grown in the field and climate chambers significantly differ in leaf morphology and photosystem components [link]Paper   doi   link   bibtex  
A collection of INDEL markers for map-based cloning in seven Arabidopsis accessions. Păcurar, D. I., Păcurar, M. L., Street, N., Bussell, J. D., Pop, T. I., Gutierrez, L., & Bellini, C. Journal of Experimental Botany, 63(7): 2491–2501. April 2012.
A collection of INDEL markers for map-based cloning in seven Arabidopsis accessions [link]Paper   doi   link   bibtex  
Fructokinase is required for carbon partitioning to cellulose in aspen wood: Fructokinase in aspen wood formation. Roach, M., Gerber, L., Sandquist, D., Gorzsás, A., Hedenström, M., Kumar, M., Steinhauser, M. C., Feil, R., Daniel, G., Stitt, M., Sundberg, B., & Niittylä, T. The Plant Journal, 70(6): 967–977. June 2012.
Fructokinase is required for carbon partitioning to cellulose in aspen wood: Fructokinase in aspen wood formation [link]Paper   doi   link   bibtex  
Comparison of gene expression markers during zygotic and somatic embryogenesis in pine. Lara-Chavez, A., Egertsdotter, U., & Flinn, B. S. In Vitro Cellular & Developmental Biology - Plant, 48(3): 341–354. June 2012.
Comparison of gene expression markers during zygotic and somatic embryogenesis in pine [link]Paper   doi   link   bibtex  
The impact of light intensity on shade-induced leaf senescence: Light-dependent induction of leaf senescence. Brouwer, B., Ziolkowska, A., Bagard, M., Keech, O., & Gardeström, P. Plant, Cell & Environment, 35(6): 1084–1098. June 2012.
The impact of light intensity on shade-induced leaf senescence: Light-dependent induction of leaf senescence [link]Paper   doi   link   bibtex  
How to Grow Transgenic Arabidopsis in the Field. Jänkänpää, H. J., & Jansson, S. In Dunwell, J. M., & Wetten, A. C., editor(s), Transgenic Plants, volume 847, pages 483–494. Humana Press, Totowa, NJ, 2012. Series Title: Methods in Molecular Biology
How to Grow Transgenic Arabidopsis in the Field [link]Paper   doi   link   bibtex  
Group III-A XTH Genes of Arabidopsis Encode Predominant Xyloglucan Endohydrolases That Are Dispensable for Normal Growth. Kaewthai, N., Gendre, D., Eklöf, J. M., Ibatullin, F. M., Ezcurra, I., Bhalerao, R. P., & Brumer, H. Plant Physiology, 161(1): 440–454. December 2012.
Group III-A <i>XTH</i> Genes of Arabidopsis Encode Predominant Xyloglucan Endohydrolases That Are Dispensable for Normal Growth [link]Paper   doi   link   bibtex   abstract  
Auxin reflux between the endodermis and pericycle promotes lateral root initiation. Marhavý, P., Vanstraelen, M., De Rybel, B., Zhaojun, D., Bennett, M. J, Beeckman, T., & Benková, E. The EMBO Journal, 32(1): 149–158. November 2012.
Auxin reflux between the endodermis and pericycle promotes lateral root initiation [link]Paper   doi   link   bibtex