2025 (37)
The protein kinases KIPK and KIPK-LIKE1 suppress overbending during negative hypocotyl gravitropic growth in Arabidopsis. Xiao, Y., Zourelidou, M., Bassukas, A. E L., Weller, B., Janacek, D. P, Šimura, J., Ljung, K., Hammes, U. Z, Li, J., & Schwechheimer, C. The Plant Cell, 37(4): koaf056. April 2025.
The protein kinases KIPK and KIPK-LIKE1 suppress overbending during negative hypocotyl gravitropic growth in Arabidopsis [link]Paper   doi   link   bibtex   abstract  
Probing substrate water access through the O1 channel of Photosystem II by single site mutations and membrane inlet mass spectrometry. Aydin, A. O., de Lichtenberg, C., Liang, F., Forsman, J., Graça, A. T., Chernev, P., Zhu, S., Mateus, A., Magnuson, A., Cheah, M. H., Schröder, W. P., Ho, F., Lindblad, P., Debus, R. J., Mamedov, F., & Messinger, J. Photosynthesis Research, 163(3): 28. April 2025.
Probing substrate water access through the O1 channel of Photosystem II by single site mutations and membrane inlet mass spectrometry [link]Paper   doi   link   bibtex   abstract  
Damage activates EXG1 and RLP44 to suppress vascular differentiation during regeneration in Arabidopsis. Mazumdar, S., Augstein, F., Zhang, A., Musseau, C., Anjam, M. S., Marhavy, P., & Melnyk, C. W. Plant Communications, 6(4): 101256. April 2025.
Damage activates <i>EXG1</i> and <i>RLP44</i> to suppress vascular differentiation during regeneration in <i>Arabidopsis</i> [link]Paper   doi   link   bibtex   abstract  
X-ray Absorption Spectroscopy of Dilute Metalloenzymes at X-ray Free-Electron Lasers in a Shot-by-Shot Mode. Bogacz, I., Szilagyi, E., Makita, H., Simon, P. S., Zhang, M., Doyle, M. D., Chatterjee, K., Kretzschmar, M., Chernev, P., Croy, N., Cheah, M., Dasgupta, M., Nangca, I., Fransson, T., Bhowmick, A., Brewster, A. S., Sauter, N. K., Owada, S., Tono, K., Zerdane, S., Oggenfuss, A., Babich, D., Sander, M., Mankowsky, R., Lemke, H. T., Gee, L. B., Sato, T., Kroll, T., Messinger, J., Alonso-Mori, R., Bergmann, U., Sokaras, D., Yachandra, V. K., Kern, J., & Yano, J. The Journal of Physical Chemistry Letters, 16(15): 3778–3787. April 2025. Publisher: American Chemical Society
X-ray Absorption Spectroscopy of Dilute Metalloenzymes at X-ray Free-Electron Lasers in a Shot-by-Shot Mode [link]Paper   doi   link   bibtex   abstract  
ELF3 coordinates temperature and photoperiodic control of seasonal growth in hybrid aspen. Nair, A., Maurya, J. P., Pandey, S. K., Singh, R. K., Miskolczi, P. C., Aryal, B., & Bhalerao, R. P. Current Biology, 35(7): 1484–1494.e2. April 2025.
ELF3 coordinates temperature and photoperiodic control of seasonal growth in hybrid aspen [link]Paper   doi   link   bibtex   abstract  
Photosynthetic advantages of conifers in the boreal forest. Bag, P., Ivanov, A. G., Huner, N. P., & Jansson, S. Trends in Plant Science, 30(4): 409–423. April 2025.
Photosynthetic advantages of conifers in the boreal forest [link]Paper   doi   link   bibtex   abstract  
Nature’s Master of Ceremony: The Populus Circadian Clock as Orchestrator of Tree Growth and Phenology. Mariën, B., Robinson, K. M., Jurca, M., Michelson, I. H., Takata, N., Kozarewa, I., Pin, P. A., Ingvarsson, P. K., Moritz, T., Ibáñez, C., Nilsson, O., Jansson, S., Penfield, S., Yu, J., & Eriksson, M. E. npj Biological Timing and Sleep, 2(1): 1–19. April 2025. Publisher: Nature Publishing Group
Nature’s Master of Ceremony: The Populus Circadian Clock as Orchestrator of Tree Growth and Phenology [link]Paper   doi   link   bibtex   abstract  
The Arabidopsis thaliana core splicing factor PORCUPINE/SmE1 requires intron-mediated expression. Dikaya, V., Rojas-Murcia, N., Benstein, R., Eiserhardt, W., & Schmid, M. PLoS ONE, 20(3 March). 2025.
doi   link   bibtex   abstract  
Mutations in HEADING DATE 1 affect transcription and cell wall composition in rice. Biancucci, M., Chirivì, D., Baldini, A., Badenhorst, E., Dobetti, F., Khahani, B., Formentin, E., Eguen, T., Turck, F., Moore, J. P, Tavakol, E., Wenkel, S., Lo Schiavo, F., Ezquer, I., Brambilla, V., Horner, D., Chiara, M., Perrella, G., Betti, C., & Fornara, F. Plant Physiology,kiaf120. March 2025.
Mutations in HEADING DATE 1 affect transcription and cell wall composition in rice [link]Paper   doi   link   bibtex   abstract  
Incorporating genetic load contributes to predicting Arabidopsis thaliana’s response to climate change. Jiang, J., Chen, J., Li, X., Wang, L., Mao, J., Wang, B., & Guo, Y. Nature Communications, 16(1): 2752. March 2025. Publisher: Nature Publishing Group
Incorporating genetic load contributes to predicting Arabidopsis thaliana’s response to climate change [link]Paper   doi   link   bibtex   abstract  
A suitable strategy to find IAA metabolism mutants. Casanova-Sáez, R., Pěnčík, A., Muñoz-Viana, R., Brunoni, F., Pinto, R., Novák, O., Ljung, K., & Mateo-Bonmatí, E. Physiologia Plantarum, 177(2): e70166. 2025. _eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1111/ppl.70166
A suitable strategy to find IAA metabolism mutants [link]Paper   doi   link   bibtex   abstract  
Population genomics of Marchantia polymorpha subsp. ruderalis reveals evidence of climate adaptation. Wu, S., Jandrasits, K., Swarts, K., Roetzer, J., Akimcheva, S., Shimamura, M., Hisanaga, T., Berger, F., & Dolan, L. Current Biology, 35(5): 970–980.e3. March 2025.
Population genomics of <i>Marchantia polymorpha</i> subsp. <i>ruderalis</i> reveals evidence of climate adaptation [link]Paper   doi   link   bibtex   abstract  
Metabolomic profiling of shade response and in silico analysis of PAL homologs imply the potential presence of bifunctional ammonia lyases in conifers. Ranade, S. S., & García-Gil, M. R. Physiologia Plantarum, 177(2): e70175. 2025. _eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1111/ppl.70175
Metabolomic profiling of shade response and in silico analysis of PAL homologs imply the potential presence of bifunctional ammonia lyases in conifers [link]Paper   doi   link   bibtex   abstract  
Is Photosynthesis-Derived NADPH Really a Source of 2H-Depleted Hydrogen in Plant Compounds?. Holloway-Phillips, M., Tcherkez, G., Wieloch, T., Lehmann, M. M., & Werner, R. A. Plant, Cell & Environment. January 2025. _eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1111/pce.15403
Is Photosynthesis-Derived NADPH Really a Source of 2H-Depleted Hydrogen in Plant Compounds? [link]Paper   doi   link   bibtex   abstract  
The asymmetry engine: how plants harness asymmetries to shape their bodies. Jonsson, K., Routier-Kierzkowska, A., & Bhalerao, R. P. New Phytologist, 245(6): 2422–2427. January 2025. _eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1111/nph.20413
The asymmetry engine: how plants harness asymmetries to shape their bodies [link]Paper   doi   link   bibtex   abstract  
Intercellular communication: Regulation of plasmodesmata. Bhalerao, R. P. Current Biology, 35(4): R143–R145. February 2025. Publisher: Elsevier
Intercellular communication: Regulation of plasmodesmata [link]Paper   doi   link   bibtex  
The atypical proteome of mitochondria from mature pollen grains. Boussardon, C., Simon, M., Carrie, C., Fuszard, M., Meyer, E. H., Budar, F., & Keech, O. Current Biology, 35(4): 776–787.e5. February 2025.
The atypical proteome of mitochondria from mature pollen grains [link]Paper   doi   link   bibtex   abstract  
Exploring the world of small proteins in plant biology and bioengineering. Petri, L., Van Humbeeck, A., Niu, H., Ter Waarbeek, C., Edwards, A., Chiurazzi, M. J., Vittozzi, Y., & Wenkel, S. Trends in Genetics, 41(2): 170–180. February 2025.
Exploring the world of small proteins in plant biology and bioengineering [link]Paper   doi   link   bibtex   abstract  
Data-driven resources and computational tools in non-model plant species. Street, N. R. Physiologia Plantarum, 177(1): e70133. 2025. _eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1111/ppl.70133
Data-driven resources and computational tools in non-model plant species [link]Paper   doi   link   bibtex  
Improved methodology for tracing a pulse of 13C-labelled tree photosynthate carbon to ectomycorrhizal roots, other soil biota and soil processes in the field. Högberg, P., Klatt, C., Franklin, O., Henriksson, N., Lim, H., Inselsbacher, E., Hurry, V., Näsholm, T., & Högberg, M. N Tree Physiology, 45(1): tpae169. January 2025.
Improved methodology for tracing a pulse of 13C-labelled tree photosynthate carbon to ectomycorrhizal roots, other soil biota and soil processes in the field [link]Paper   doi   link   bibtex   abstract  
Cellular damage triggers mechano-chemical control of cell wall dynamics and patterned cell divisions in plant healing. Di Fino, L. M., Anjam, M. S., Besten, M., Mentzelopoulou, A., Papadakis, V., Zahid, N., Baez, L. A., Trozzi, N., Majda, M., Ma, X., Hamann, T., Sprakel, J., Moschou, P. N., Smith, R. S., & Marhavý, P. Developmental Cell. January 2025.
Cellular damage triggers mechano-chemical control of cell wall dynamics and patterned cell divisions in plant healing [link]Paper   doi   link   bibtex   abstract  
A long-distance inhibitory system regulates haustoria numbers in parasitic plants. Kokla, A., Leso, M., Šimura, J., Wärdig, C., Hayashi, M., Nishii, N., Tsuchiya, Y., Ljung, K., & Melnyk, C. W. Proceedings of the National Academy of Sciences, 122(8): e2424557122. February 2025. Publisher: Proceedings of the National Academy of Sciences
A long-distance inhibitory system regulates haustoria numbers in parasitic plants [link]Paper   doi   link   bibtex   abstract  
Reduced RG-II pectin dimerization disrupts differential growth by attenuating hormonal regulation. Jewaria, P. K., Aryal, B., Begum, R. A., Wang, Y., Sancho-Andrés, G., Baba, A. I., Yu, M., Li, X., Lin, J., Fry, S. C., Verger, S., Russinova, E., Jonsson, K., & Bhalerao, R. P. Science Advances, 11(7): eads0760. February 2025. Publisher: American Association for the Advancement of Science
Reduced RG-II pectin dimerization disrupts differential growth by attenuating hormonal regulation [link]Paper   doi   link   bibtex   abstract  
Spectral unmixing of hyperspectral images revealed pine wilt disease sensitive endmembers. Jeong, S. W., Lee, I. H., Kim, Y., Kang, K., Shim, D., Hurry, V., Ivanov, A. G., & Park, Y. Physiologia Plantarum, 177(1): e70090. 2025. _eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1111/ppl.70090
Spectral unmixing of hyperspectral images revealed pine wilt disease sensitive endmembers [link]Paper   doi   link   bibtex   abstract  
Insights into PeERF168 gene in slash pine terpene biosynthesis: Integrating high-throughput phenotyping, GWAS, and transgenic studies. Ding, X., Diao, S., Zhang, Y., Luan, Q., Li, Y., Jiang, J., & Wu, H. X. International Journal of Biological Macromolecules, 300: 139728. April 2025.
Insights into <i>PeERF168</i> gene in slash pine terpene biosynthesis: Integrating high-throughput phenotyping, GWAS, and transgenic studies [link]Paper   doi   link   bibtex   abstract  
TYPHON proteins are RAB-dependent mediators of the trans-Golgi network secretory pathway. Baral, A., Gendre, D., Aryal, B., Fougère, L., Di Fino, L. M., Ohori, C., Sztojka, B., Uemura, T., Ueda, T., Marhavý, P., Boutté, Y., & Bhalerao, R. P The Plant Cell, 37(1): koae280. January 2025.
TYPHON proteins are RAB-dependent mediators of the trans-Golgi network secretory pathway [link]Paper   doi   link   bibtex   abstract  
New insights into the mechanisms of plant isotope fractionation from combined analysis of intramolecular 13C and deuterium abundances in Pinus nigra tree-ring glucose. Wieloch, T., Holloway-Phillips, M., Yu, J., & Niittylä, T. New Phytologist, 245(3): 1000–1017. February 2025.
New insights into the mechanisms of plant isotope fractionation from combined analysis of intramolecular 13C and deuterium abundances in Pinus nigra tree-ring glucose [link]Paper   doi   link   bibtex   abstract  
Modification of xylan in secondary walls alters cell wall biosynthesis and wood formation programs and improves saccharification. Sivan, P., Urbancsok, J., Donev, E. N., Derba-Maceluch, M., Barbut, F. R., Yassin, Z., Gandla, M. L., Mitra, M., Heinonen, S. E., Šimura, J., Cermanová, K., Karady, M., Scheepers, G., Jönsson, L. J., Master, E. R., Vilaplana, F., & Mellerowicz, E. J. Plant Biotechnology Journal, 23(1): 174–197. January 2025. _eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1111/pbi.14487
Modification of xylan in secondary walls alters cell wall biosynthesis and wood formation programs and improves saccharification [link]Paper   doi   link   bibtex   abstract  
Shining a new light on the classical concepts of carbon-isotope dendrochronology. Wieloch, T. New Phytologist, 245(3): 939–944. February 2025. _eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1111/nph.20258
Shining a new light on the classical concepts of carbon-isotope dendrochronology [link]Paper   doi   link   bibtex   abstract  
Epigenetic suppression of creatine kinase B in adipocytes links endoplasmic reticulum stress to obesity-associated inflammation. Renzi, G., Vlassakev, I., Hansen, M., Higos, R., Lecoutre, S., Elmastas, M., Hodek, O., Moritz, T., Alaeddine, L. M., Frendo–Cumbo, S., Dahlman, I., Kerr, A., Maqdasy, S., Mejhert, N., & Rydén, M. Molecular Metabolism, 92: 102082. February 2025.
Epigenetic suppression of creatine kinase B in adipocytes links endoplasmic reticulum stress to obesity-associated inflammation [link]Paper   doi   link   bibtex   abstract  
Characterization of SARS-CoV-2 nucleocapsid protein oligomers. Farci, D., Graça, A. T., Hall, M., Haniewicz, P., Kereïche, S., Faull, P., Kirkpatrick, J., Tramontano, E., Schröder, W. P., & Piano, D. Journal of Structural Biology, 217(1): 108162. March 2025.
Characterization of SARS-CoV-2 nucleocapsid protein oligomers [link]Paper   doi   link   bibtex   abstract  
Adenylate-driven equilibration of both ribo- and deoxyribonucleotides is under magnesium control: Quantification of the Mg2+-signal. Kleczkowski, L. A., & Igamberdiev, A. U. Journal of Plant Physiology, 304: 154380. January 2025.
Adenylate-driven equilibration of both ribo- and deoxyribonucleotides is under magnesium control: Quantification of the Mg2+-signal [link]Paper   doi   link   bibtex   abstract  
Aboveground and belowground trait coordination across twelve boreal forest tree species. Spitzer, C. M., Jämtgård, S., Larsson, M. J., & Gundale, M. J. Scientific Reports, 15(1): 680. January 2025. Publisher: Nature Publishing Group
Aboveground and belowground trait coordination across twelve boreal forest tree species [link]Paper   doi   link   bibtex   abstract  
Pantothenate kinase 4 controls skeletal muscle substrate metabolism. Miranda-Cervantes, A., Fritzen, A. M., Raun, S. H., Hodek, O., Møller, L. L. V., Johann, K., Deisen, L., Gregorevic, P., Gudiksen, A., Artati, A., Adamski, J., Andersen, N. R., Sigvardsen, C. M., Carl, C. S., Voldstedlund, C. T., Kjøbsted, R., Hauck, S. M., Schjerling, P., Jensen, T. E., Cebrian-Serrano, A., Jähnert, M., Gottmann, P., Burtscher, I., Lickert, H., Pilegaard, H., Schürmann, A., Tschöp, M. H., Moritz, T., Müller, T. D., Sylow, L., Kiens, B., Richter, E. A., & Kleinert, M. Nature Communications, 16(1): 345. January 2025. Publisher: Nature Publishing Group
Pantothenate kinase 4 controls skeletal muscle substrate metabolism [link]Paper   doi   link   bibtex   abstract  
Conversion of unmanaged boreal forest to even-aged management has a stronger effect on carbon stocks in the organic layer than the mineral soil. Larsson, M., Dahl, J., Lundmark, T., Gundale, M. J., Lim, H., & Nordin, A. Forest Ecology and Management, 578: 122458. February 2025.
Conversion of unmanaged boreal forest to even-aged management has a stronger effect on carbon stocks in the organic layer than the mineral soil [link]Paper   doi   link   bibtex   abstract  
Integration of Mitoflash and Time-Series Transcriptomics Facilitates Energy Dynamics Tracking and Substrate Supply Analysis of Floral Thermogenesis in Lotus. Yu, M., Wang, S., Gu, G., Shi, T., Zhang, J., Jia, Y., Ma, Q., Porth, I., Mao, J., & Wang, R. Plant, Cell & Environment, 48(1): 893–906. 2025. _eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1111/pce.15185
Integration of Mitoflash and Time-Series Transcriptomics Facilitates Energy Dynamics Tracking and Substrate Supply Analysis of Floral Thermogenesis in Lotus [link]Paper   doi   link   bibtex   abstract  
Influence of TEMPO on preparation of softwood nanofibrils and their hydrogel network properties. Baş, Y., Berglund, L., Stevanic, J. S., Scheepers, G., Niittylä, T., & Oksman, K. Carbohydrate Polymers, 348: 122812. January 2025.
Influence of TEMPO on preparation of softwood nanofibrils and their hydrogel network properties [link]Paper   doi   link   bibtex   abstract