2023 (107)
Unveiling the intricate mechanisms of plant defense. Guerreiro, J., & Marhavý, P. Frontiers in Plant Physiology, 1. 2023.
Unveiling the intricate mechanisms of plant defense [link]Paper   doi   link   bibtex   abstract  
Dynamics and mechanics of plant cell walls: insights into plant growth, defence, and stress response. Bacete, L., & Mélida, H. Plant Molecular Biology, 113(6): 329–330. December 2023.
Dynamics and mechanics of plant cell walls: insights into plant growth, defence, and stress response [link]Paper   doi   link   bibtex  
Fluorescence-activated multi-organelle mapping of subcellular plant hormone distribution. Skalický, V., Antoniadi, I., Pěnčík, A., Chamrád, I., Lenobel, R., Kubeš, M. F., Zatloukal, M., Žukauskaitė, A., Strnad, M., Ljung, K., & Novák, O. The Plant Journal, 116(6): 1825–1841. September 2023. _eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1111/tpj.16456
Fluorescence-activated multi-organelle mapping of subcellular plant hormone distribution [link]Paper   doi   link   bibtex   abstract  
Regulation of PIN polarity in response to abiotic stress. Sharma, M., & Marhava, P. Current Opinion in Plant Biology, 76: 102445. December 2023.
Regulation of PIN polarity in response to abiotic stress [link]Paper   doi   link   bibtex   abstract  
Preparation and Characterization of Softwood and Hardwood Nanofibril Hydrogels: Toward Wound Dressing Applications. Baş, Y., Berglund, L., Niittylä, T., Zattarin, E., Aili, D., Sotra, Z., Rinklake, I., Junker, J., Rakar, J., & Oksman, K. Biomacromolecules, 24(12): 5605–5619. December 2023. Publisher: American Chemical Society
Preparation and Characterization of Softwood and Hardwood Nanofibril Hydrogels: Toward Wound Dressing Applications [link]Paper   doi   link   bibtex   abstract  
The interplay between cell wall integrity and cell cycle progression in plants. Soni, N., & Bacete, L. Plant Molecular Biology, 113(6): 367–382. December 2023.
The interplay between cell wall integrity and cell cycle progression in plants [link]Paper   doi   link   bibtex   abstract  
Biotechnological Potential of the Stress Response and Plant Cell Death Regulators Proteins in the Biofuel Industry. Bernacki, M. J., Mielecki, J., Antczak, A., Drożdżek, M., Witoń, D., Dąbrowska-Bronk, J., Gawroński, P., Burdiak, P., Marchwicka, M., Rusaczonek, A., Dąbkowska-Susfał, K., Strobel, W. R., Mellerowicz, E. J., Zawadzki, J., Szechyńska-Hebda, M., & Karpiński, S. Cells, 12(16): 2018. August 2023. Number: 16 Publisher: Multidisciplinary Digital Publishing Institute
Biotechnological Potential of the Stress Response and Plant Cell Death Regulators Proteins in the Biofuel Industry [link]Paper   doi   link   bibtex   abstract  
Auxin as an architect of the pectin matrix. Jobert, F., Yadav, S., & Robert, S. Journal of Experimental Botany, 74(22): 6933–6949. December 2023.
Auxin as an architect of the pectin matrix [link]Paper   doi   link   bibtex   abstract  
Toward uncovering an operating system in plant organs. Davis, G. V., de Souza Moraes, T., Khanapurkar, S., Dromiack, H., Ahmad, Z., Bayer, E. M., Bhalerao, R. P., Walker, S. I., & Bassel, G. W. Trends in Plant Science. November 2023.
Toward uncovering an operating system in plant organs [link]Paper   doi   link   bibtex   abstract  
Environmental controls on seedling establishment in a boreal forest: implications for Scots pine regeneration in continuous cover forestry. Häggström, B., Gundale, M. J., & Nordin, A. European Journal of Forest Research. October 2023.
Environmental controls on seedling establishment in a boreal forest: implications for Scots pine regeneration in continuous cover forestry [link]Paper   doi   link   bibtex   abstract  
Cell wall dynamics: novel tools and research questions. Alonso Baez, L., & Bacete, L. Journal of Experimental Botany, 74(21): 6448–6467. November 2023.
Cell wall dynamics: novel tools and research questions [link]Paper   doi   link   bibtex   abstract  
Changes in cell wall composition due to a pectin biosynthesis enzyme GAUT10 impact root growth. Dash, L., Swaminathan, S., Šimura, J., Gonzales, C. L. P, Montes, C., Solanki, N., Mejia, L., Ljung, K., Zabotina, O. A, & Kelley, D. R Plant Physiology, 193(4): 2480–2497. December 2023.
Changes in cell wall composition due to a pectin biosynthesis enzyme GAUT10 impact root growth [link]Paper   doi   link   bibtex   abstract  
Age-dependent seasonal growth cessation in Populus. Liao, X., Su, Y., Klintenäs, M., Li, Y., Sane, S., Wu, Z., Chen, Q., Zhang, B., Nilsson, O., & Ding, J. Proceedings of the National Academy of Sciences, 120(48): e2311226120. November 2023. Publisher: Proceedings of the National Academy of Sciences
Age-dependent seasonal growth cessation in Populus [link]Paper   doi   link   bibtex   abstract  
Tree architecture: A strigolactone-deficient mutant reveals a connection between branching order and auxin gradient along the tree stem. Su, C., Kokosza, A., Xie, X., Pěnčík, A., Zhang, Y., Raumonen, P., Shi, X., Muranen, S., Topcu, M. K., Immanen, J., Hagqvist, R., Safronov, O., Alonso-Serra, J., Eswaran, G., Venegas, M. P., Ljung, K., Ward, S., Mähönen, A. P., Himanen, K., Salojärvi, J., Fernie, A. R., Novák, O., Leyser, O., Pałubicki, W., Helariutta, Y., & Nieminen, K. Proceedings of the National Academy of Sciences, 120(48): e2308587120. November 2023. Publisher: Proceedings of the National Academy of Sciences
Tree architecture: A strigolactone-deficient mutant reveals a connection between branching order and auxin gradient along the tree stem [link]Paper   doi   link   bibtex   abstract  
Confined-microtubule assembly shapes three-dimensional cell wall structures in xylem vessels. Sasaki, T., Saito, K., Inoue, D., Serk, H., Sugiyama, Y., Pesquet, E., Shimamoto, Y., & Oda, Y. Nature Communications, 14(1): 6987. November 2023. Number: 1 Publisher: Nature Publishing Group
Confined-microtubule assembly shapes three-dimensional cell wall structures in xylem vessels [link]Paper   doi   link   bibtex   abstract  
Chitin degradation by Synechococcus WH7803. Capovilla, G., Castro, K. G., Collani, S., Kearney, S. M., Kehoe, D. M., & Chisholm, S. W. Scientific Reports, 13(1): 19944. November 2023. Number: 1 Publisher: Nature Publishing Group
Chitin degradation by Synechococcus WH7803 [link]Paper   doi   link   bibtex   abstract  
Unraveling the evolutionary dynamics of the TPS gene family in land plants. Yan, X., Zhou, S., Liu, H., Zhao, S., Tian, X., Shi, T., Bao, Y., Li, Z., Jia, K., Nie, S., Guo, J., Kong, L., Porth, I. M., & Mao, J. Frontiers in Plant Science, 14. October 2023.
Unraveling the evolutionary dynamics of the TPS gene family in land plants [link]Paper   doi   link   bibtex   abstract  
LBD18 and IAA14 antagonistically interact with ARF7 via the invariant Lys and acidic residues of the OPCA motif in the PB1 domain. Nguyen, U. T., Pandey, S. K., & Kim, J. Planta, 258(2): 26. June 2023.
LBD18 and IAA14 antagonistically interact with ARF7 via the invariant Lys and acidic residues of the OPCA motif in the PB1 domain [link]Paper   doi   link   bibtex   abstract  
Effect of arginine-phosphate addition on early survival and growth of Scots pine, Norway spruce and silver birch. Häggström, B., Lutter, R., Lundmark, T., Sjödin, F., & Nordin, A. Silva Fennica, 57(2). September 2023.
Effect of arginine-phosphate addition on early survival and growth of Scots pine, Norway spruce and silver birch [link]Paper   doi   link   bibtex  
Natural variation in the prolyl 4-hydroxylase gene PtoP4H9 contributes to perennial stem growth in Populus. Xiao, L., Fang, Y., Zhang, H., Quan, M., Zhou, J., Li, P., Wang, D., Ji, L., Ingvarsson, P. K, Wu, H. X, El-Kassaby, Y. A, Du, Q., & Zhang, D. The Plant Cell, 35(11): 4046–4065. November 2023.
Natural variation in the prolyl 4-hydroxylase gene PtoP4H9 contributes to perennial stem growth in Populus [link]Paper   doi   link   bibtex   abstract  
Chemical induction of hypocotyl rooting reveals extensive conservation of auxin signalling controlling lateral and adventitious root formation. Zeng, Y., Verstraeten, I., Trinh, H. K., Lardon, R., Schotte, S., Olatunji, D., Heugebaert, T., Stevens, C., Quareshy, M., Napier, R., Nastasi, S. P., Costa, A., De Rybel, B., Bellini, C., Beeckman, T., Vanneste, S., & Geelen, D. New Phytologist, 240(5): 1883–1899. October 2023. _eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1111/nph.19292
Chemical induction of hypocotyl rooting reveals extensive conservation of auxin signalling controlling lateral and adventitious root formation [link]Paper   doi   link   bibtex   abstract  
Histochemical Detection of Peroxidase and Laccase Activities in Populus Secondary Xylem. Alonso, M. P., Carrió-Seguí, À., & Tuominen, H. In Agusti, J., editor(s), Xylem: Methods and Protocols, of Methods in Molecular Biology, pages 139–148. Springer US, New York, NY, November 2023.
Histochemical Detection of Peroxidase and Laccase Activities in Populus Secondary Xylem [link]Paper   doi   link   bibtex   abstract  
Early and repeated nutrient additions support far greater stemwood production in Norway spruce than traditional late-rotation fertilisation. Svensson, C., Bader, M. K., Forsmark, B., Nilsson, U., Lundmark, T., Nordin, A., & Bergh, J. Forest Ecology and Management, 549: 121425. December 2023.
Early and repeated nutrient additions support far greater stemwood production in Norway spruce than traditional late-rotation fertilisation [link]Paper   doi   link   bibtex   abstract  
Rolling front landscape breeding. Lstibůrek, M., García‐Gil, M. R., & Steffenrem, A. Annals of Forest Science, 80(1): 36. October 2023.
Rolling front landscape breeding [link]Paper   doi   link   bibtex   abstract  
Flexure wood formation via growth reprogramming in hybrid aspen involves jasmonates and polyamines and transcriptional changes resembling tension wood development. Urbancsok, J., Donev, E. N., Sivan, P., van Zalen, E., Barbut, F. R., Derba-Maceluch, M., Šimura, J., Yassin, Z., Gandla, M. L., Karady, M., Ljung, K., Winestrand, S., Jönsson, L. J., Scheepers, G., Delhomme, N., Street, N. R., & Mellerowicz, E. J. New Phytologist. October 2023. _eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1111/nph.19307
Flexure wood formation via growth reprogramming in hybrid aspen involves jasmonates and polyamines and transcriptional changes resembling tension wood development [link]Paper   doi   link   bibtex   abstract  
Opening the gates. Nair, Aswin, & Bhalerao, Rishikesh P. Nature Plants, 9: 1375–1376. September 2023.
Opening the gates [link]Paper   doi   link   bibtex  
Regulation of Flowering Time and Other Developmental Plasticities by 3’ Splicing Factor-Mediated Alternative Splicing in Arabidopsis thaliana. Lee, K. C., Kim, Y., Kim, J., Lee, H., & Lee, J. H. Plants, 12(19): 3508. October 2023. Number: 19 Publisher: Multidisciplinary Digital Publishing Institute
Regulation of Flowering Time and Other Developmental Plasticities by 3’ Splicing Factor-Mediated Alternative Splicing in Arabidopsis thaliana [link]Paper   doi   link   bibtex   abstract  
An interplay between bZIP16, bZIP68, and GBF1 regulates nuclear photosynthetic genes during photomorphogenesis in Arabidopsis. Norén Lindbäck, L., Ji, Y., Cervela-Cardona, L., Jin, X., Pedmale, U. V., & Strand, Å. New Phytologist, 240(3): 1082–1096. 2023. _eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1111/nph.19219
An interplay between bZIP16, bZIP68, and GBF1 regulates nuclear photosynthetic genes during photomorphogenesis in Arabidopsis [link]Paper   doi   link   bibtex   abstract  
Poplar wood - inside out: High-resolution spatial, cellular, and pseudotime projections from cambial transcriptomes. Choudhary, S., & Tuominen, H. Molecular Plant, 16(10): 1490–1492. October 2023.
Poplar wood - inside out: High-resolution spatial, cellular, and pseudotime projections from cambial transcriptomes [link]Paper   doi   link   bibtex  
Quantifying adaptive evolution and the effects of natural selection across the Norway spruce genome. Wang, X., & Ingvarsson, P. K. Molecular Ecology, 32(19): 5288–5304. September 2023. _eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1111/mec.17106
Quantifying adaptive evolution and the effects of natural selection across the Norway spruce genome [link]Paper   doi   link   bibtex   abstract  
Antigravitropic PIN polarization maintains non-vertical growth in lateral roots. Roychoudhry, S., Sageman-Furnas, K., Wolverton, C., Grones, P., Tan, S., Molnár, G., De Angelis, M., Goodman, H. L., Capstaff, N., Lloyd, J. P. B., Mullen, J., Hangarter, R., Friml, J., & Kepinski, S. Nature Plants, 9(9): 1500–1513. September 2023. Number: 9 Publisher: Nature Publishing Group
Antigravitropic PIN polarization maintains non-vertical growth in lateral roots [link]Paper   doi   link   bibtex   abstract  
Ectopic callose deposition into woody biomass modulates the nano-architecture of macrofibrils. Bourdon, M., Lyczakowski, J. J., Cresswell, R., Amsbury, S., Vilaplana, F., Le Guen, M., Follain, N., Wightman, R., Su, C., Alatorre-Cobos, F., Ritter, M., Liszka, A., Terrett, O. M., Yadav, S. R., Vatén, A., Nieminen, K., Eswaran, G., Alonso-Serra, J., Müller, K. H., Iuga, D., Miskolczi, P. C., Kalmbach, L., Otero, S., Mähönen, A. P., Bhalerao, R., Bulone, V., Mansfield, S. D., Hill, S., Burgert, I., Beaugrand, J., Benitez-Alfonso, Y., Dupree, R., Dupree, P., & Helariutta, Y. Nature Plants, 9(9): 1530–1546. September 2023. Number: 9 Publisher: Nature Publishing Group
Ectopic callose deposition into woody biomass modulates the nano-architecture of macrofibrils [link]Paper   doi   link   bibtex   abstract  
NAC domain transcription factors VNI2 and ATAF2 form protein complexes and regulate leaf senescence. Nagahage, I. S. P., Matsuda, K., Miyashita, K., Fujiwara, S., Mannapperuma, C., Yamada, T., Sakamoto, S., Ishikawa, T., Nagano, M., Ohtani, M., Kato, K., Uchimiya, H., Mitsuda, N., Kawai-Yamada, M., Demura, T., & Yamaguchi, M. Plant Direct, 7(9): e529. September 2023. _eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1002/pld3.529
NAC domain transcription factors VNI2 and ATAF2 form protein complexes and regulate leaf senescence [link]Paper   doi   link   bibtex   abstract  
Cauliflower mosaic virus protein P6 is a multivalent node for RNA granule proteins and interferes with stress granule responses during plant infection. Hoffmann, G., López-González, S., Mahboubi, A., Hanson, J., & Hafrén, A. The Plant Cell, 35(9): 3363–3382. September 2023.
Cauliflower mosaic virus protein P6 is a multivalent node for RNA granule proteins and interferes with stress granule responses during plant infection [link]Paper   doi   link   bibtex   abstract  
Development of an Advanced-Generation Multi-Objective Breeding Population for the 4th Cycle of Chinese Fir (Cunninghamia lanceolata (Lamb.) Hook.). Zhao, B., Bian, L., Feng, Q., Wu, J., Zhang, X., Zheng, R., Zheng, X., Yang, Z., Chen, Z., Wu, H. X., & Shi, J. Forests, 14(8): 1658. August 2023. Number: 8 Publisher: Multidisciplinary Digital Publishing Institute
Development of an Advanced-Generation Multi-Objective Breeding Population for the 4th Cycle of Chinese Fir (Cunninghamia lanceolata (Lamb.) Hook.) [link]Paper   doi   link   bibtex   abstract  
Iron uptake of etioplasts is independent from photosynthesis but applies the reduction-based strategy. Sági-Kazár, M., Sárvári, É., Cseh, B., Illés, L., May, Z., Hegedűs, C., Barócsi, A., Lenk, S., Solymosi, K., & Solti, Á. Frontiers in Plant Science, 14. August 2023.
Iron uptake of etioplasts is independent from photosynthesis but applies the reduction-based strategy [link]Paper   doi   link   bibtex   abstract  
Comparison of plastid proteomes points towards a higher plastidial redox turnover in vascular tissues than in mesophyll cells. Boussardon, C., Carrie, C., & Keech, O. Journal of Experimental Botany, 74(14): 4110–4124. August 2023.
Comparison of plastid proteomes points towards a higher plastidial redox turnover in vascular tissues than in mesophyll cells [link]Paper   doi   link   bibtex   abstract  
GOLVEN peptides regulate lateral root spacing as part of a negative feedback loop on the establishment of auxin maxima. Jourquin, J., Fernandez, A. I., Wang, Q., Xu, K., Chen, J., Šimura, J., Ljung, K., Vanneste, S., & Beeckman, T. Journal of Experimental Botany, 74(14): 4031–4049. August 2023.
GOLVEN peptides regulate lateral root spacing as part of a negative feedback loop on the establishment of auxin maxima [link]Paper   doi   link   bibtex   abstract  
Macrophage innate immune responses delineate between defective translocon assemblies produced by Yersinia pseudotuberculosis YopD mutants. Farag, S. I., Francis, M. K., Gurung, J. M., Wai, S. N., Stenlund, H., Francis, M. S., & Nadeem, A. Virulence, 14(1): 2249790. August 2023. Publisher: Taylor & Francis _eprint: https://doi.org/10.1080/21505594.2023.2249790
Macrophage innate immune responses delineate between defective translocon assemblies produced by Yersinia pseudotuberculosis YopD mutants [link]Paper   doi   link   bibtex   abstract  
Growth’s secret maestros: LBD11–ROS harmony drives vascular cambium activity in Arabidopsis. Topcu, M. K., & Bhalerao, R. P. Molecular Plant, 16(8): 1246–1248. August 2023. Publisher: Elsevier
Growth’s secret maestros: LBD11–ROS harmony drives vascular cambium activity in Arabidopsis [link]Paper   doi   link   bibtex   abstract  
In Vitro Propagation of the Blueberry ‘Blue Suede™’ (Vaccinium hybrid) in Semi-Solid Medium and Temporary Immersion Bioreactors. Le, K., Johnson, S., Aidun, C. K., & Egertsdotter, U. Plants, 12(15): 2752. July 2023. Number: 15 Publisher: Multidisciplinary Digital Publishing Institute
In Vitro Propagation of the Blueberry ‘Blue Suede™’ (Vaccinium hybrid) in Semi-Solid Medium and Temporary Immersion Bioreactors [link]Paper   doi   link   bibtex   abstract  
Genomic clines across the species boundary between a hybrid pine and its progenitor in the eastern Tibetan Plateau. Guo, J., Zhao, W., Andersson, B., Mao, J., & Wang, X. Plant Communications, 4(4): 100574. July 2023.
Genomic clines across the species boundary between a hybrid pine and its progenitor in the eastern Tibetan Plateau [link]Paper   doi   link   bibtex   abstract  
A Simple Sonication Method to Isolate the Chloroplast Lumen in Arabidopsis thaliana. Hao, J., & Malnoë, A. Bio-protocol, 13(15): 4756. August 2023.
A Simple Sonication Method to Isolate the Chloroplast Lumen in Arabidopsis thaliana [link]Paper   doi   link   bibtex   abstract  
Isolation of Nuclei Tagged in Specific Cell Types (INTACT) in Arabidopsis. Benstein, R. M., Schmid, M., & You, Y. In Riechmann, J. L., & Ferrándiz, C., editor(s), Flower Development, volume 2686, pages 313–328. New York, NY, January 2023. Series Title: Methods in Molecular Biology
Isolation of Nuclei Tagged in Specific Cell Types (INTACT) in Arabidopsis [link]Paper   doi   link   bibtex   abstract  
Presence and activity of nitrogen-fixing bacteria in Scots pine needles in a boreal forest: a nitrogen-addition experiment. Bizjak, T., Sellstedt, A., Gratz, R., & Nordin, A. Tree Physiology, 43(8): 1354–1364. August 2023.
Presence and activity of nitrogen-fixing bacteria in Scots pine needles in a boreal forest: a nitrogen-addition experiment [link]Paper   doi   link   bibtex   abstract  
The effect of gene flow on frost tolerance in Scots pine – Latitudinal translocation of genetic material. Hall, D., Zhao, W., Heuchel, A., Gao, J., Wennström, U., & Wang, X. Forest Ecology and Management, 544: 121215. September 2023.
The effect of gene flow on frost tolerance in Scots pine – Latitudinal translocation of genetic material [link]Paper   doi   link   bibtex   abstract  
The non-coding RNA SVALKA locus produces a cis-natural antisense transcript that negatively regulates the expression of CBF1 and biomass production at normal temperatures. Zacharaki, V., Meena, S. K., & Kindgren, P. Plant Communications, 4(4): 100551. July 2023.
The non-coding RNA SVALKA locus produces a cis-natural antisense transcript that negatively regulates the expression of CBF1 and biomass production at normal temperatures [link]Paper   doi   link   bibtex   abstract  
An Okinawan-Based Nordic Diet Leads to Profound Effects on Gut Microbiota and Plasma Metabolites Linked to Glucose and Lipid Metabolism. Manoharan, L., Roth, B., Bang, C., Stenlund, H., & Ohlsson, B. Nutrients, 15(14): 3273. July 2023.
An Okinawan-Based Nordic Diet Leads to Profound Effects on Gut Microbiota and Plasma Metabolites Linked to Glucose and Lipid Metabolism [link]Paper   doi   link   bibtex   abstract  
Plant electrophysiology with conformable organic electronics: Deciphering the propagation of Venus flytrap action potentials. Armada-Moreira, A., Dar, A. M., Zhao, Z., Cea, C., Gelinas, J., Berggren, M., Costa, A., Khodagholy, D., & Stavrinidou, E. Science Advances, 9(30): eadh4443. July 2023.
Plant electrophysiology with conformable organic electronics: Deciphering the propagation of Venus flytrap action potentials [link]Paper   doi   link   bibtex   abstract  
Impact of xylan on field productivity and wood saccharification properties in aspen. Derba-Maceluch, M., Sivan, P., Donev, E. N., Gandla, M. L., Yassin, Z., Vaasan, R., Heinonen, E., Andersson, S., Amini, F., Scheepers, G., Johansson, U., Vilaplana, F. J., Albrectsen, B. R., Hertzberg, M., Jönsson, L. J., & Mellerowicz, E. J. Frontiers in Plant Science, 14. 2023.
Impact of xylan on field productivity and wood saccharification properties in aspen [link]Paper   doi   link   bibtex   abstract  
Salicylic acid metabolism and signalling coordinate senescence initiation in aspen in nature. Lihavainen, J., Šimura, J., Bag, P., Fataftah, N., Robinson, K. M., Delhomme, N., Novák, O., Ljung, K., & Jansson, S. Nature Communications, 14(1): 4288. July 2023. Number: 1 Publisher: Nature Publishing Group
Salicylic acid metabolism and signalling coordinate senescence initiation in aspen in nature [link]Paper   doi   link   bibtex   abstract  
Long-distance turgor pressure changes induce local activation of plant glutamate receptor-like channels. Grenzi, M., Buratti, S., Parmagnani, A. S., Abdel Aziz, I., Bernacka-Wojcik, I., Resentini, F., Šimura, J., Doccula, F. G., Alfieri, A., Luoni, L., Ljung, K., Bonza, M. C., Stavrinidou, E., & Costa, A. Current Biology. February 2023.
Long-distance turgor pressure changes induce local activation of plant glutamate receptor-like channels [link]Paper   doi   link   bibtex   abstract  
Functional characterization of rice metallothionein OsMT-I-Id: Insights into metal binding and heavy metal tolerance mechanisms. Gautam, N., Tiwari, M., Kidwai, M., Dutta, P., & Chakrabarty, D. Journal of Hazardous Materials, 458: 131815. September 2023.
Functional characterization of rice metallothionein OsMT-I-Id: Insights into metal binding and heavy metal tolerance mechanisms [link]Paper   doi   link   bibtex  
A phloem-localized Arabidopsis metacaspase (AtMC3) improves drought tolerance. Pitsili, E., Rodriguez-Trevino, R., Ruiz-Solani, N., Demir, F., Kastanaki, E., Dambire, C., de Pedro-Jové, R., Vercammen, D., Salguero-Linares, J., Hall, H., Mantz, M., Schuler, M., Tuominen, H., Van Breusegem, F., Valls, M., Munné-Bosch, S., Holdsworth, M. J., Huesgen, P. F., Rodriguez-Villalon, A., & Coll, N. S. New Phytologist, 239(4): 1281–1299. 2023. _eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1111/nph.19022
A phloem-localized Arabidopsis metacaspase (AtMC3) improves drought tolerance [link]Paper   doi   link   bibtex   abstract  
Modulating auxin response stabilizes tomato fruit set. Israeli, A., Schubert, R., Man, N., Teboul, N., Serrani Yarce, J. C., Rosowski, E. E, Wu, M., Levy, M., Efroni, I., Ljung, K., Hause, B., Reed, J. W, & Ori, N. Plant Physiology, 192(3): 2336–2355. July 2023.
Modulating auxin response stabilizes tomato fruit set [link]Paper   doi   link   bibtex   abstract  
Sequential extraction of hemicelluloses by subcritical water improves saccharification of hybrid aspen wood grown in greenhouse and field conditions. Sivan, P., Heinonen, E., Gandla, M. L., Jiménez-Quero, A., Özeren, H. D., Jönsson, L. J., Mellerowicz, E. J., & Vilaplana, F. Green Chemistry, 25(14): 5634–5646. July 2023. Publisher: The Royal Society of Chemistry
Sequential extraction of hemicelluloses by subcritical water improves saccharification of hybrid aspen wood grown in greenhouse and field conditions [link]Paper   doi   link   bibtex   abstract  
High-throughput characterization of cortical microtubule arrays response to anisotropic tensile stress. Demes, E., & Verger, S. BMC Biology, 21(1): 154. July 2023.
High-throughput characterization of cortical microtubule arrays response to anisotropic tensile stress [link]Paper   doi   link   bibtex   abstract  
Clinal variation in PHY (PAS domain) and CRY (CCT domain)—Signs of local adaptation to light quality in Norway spruce. Ranade, S. S., & García-Gil, M. R. Plant, Cell & Environment, n/a(n/a). June 2023. _eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1111/pce.14638
Clinal variation in PHY (PAS domain) and CRY (CCT domain)—Signs of local adaptation to light quality in Norway spruce [link]Paper   doi   link   bibtex   abstract  
Inbreeding Effects on the Performance and Genomic Prediction for Polysomic Tetraploid Potato Offspring Grown at High Nordic Latitudes. Ortiz, R., Reslow, F., Vetukuri, R., García-Gil, M. R., Pérez-Rodríguez, P., & Crossa, J. Genes, 14(6): 1302. June 2023. Number: 6 Publisher: Multidisciplinary Digital Publishing Institute
Inbreeding Effects on the Performance and Genomic Prediction for Polysomic Tetraploid Potato Offspring Grown at High Nordic Latitudes [link]Paper   doi   link   bibtex   abstract  
Seiðr: Efficient calculation of robust ensemble gene networks. Schiffthaler, B., van Zalen, E., Serrano, A. R., Street, N. R., & Delhomme, N. Heliyon, 9(6): e16811. June 2023.
Seiðr: Efficient calculation of robust ensemble gene networks [link]Paper   doi   link   bibtex   abstract  
A model of photosynthetic CO2 assimilation in C3 leaves accounting for respiration and energy recycling by the plastidial oxidative pentose phosphate pathway. Wieloch, T., Augusti, A., & Schleucher, J. New Phytologist, 239(2): 518–532. July 2023. _eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1111/nph.18965
A model of photosynthetic CO2 assimilation in C3 leaves accounting for respiration and energy recycling by the plastidial oxidative pentose phosphate pathway [link]Paper   doi   link   bibtex   abstract  
Exploring Redox Modulation of Plant UDP-Glucose Pyrophosphorylase. Decker, D., Aubert, J., Wilczynska, M., & Kleczkowski, L. A. International Journal of Molecular Sciences, 24(10): 8914. January 2023. Number: 10 Publisher: Multidisciplinary Digital Publishing Institute
Exploring Redox Modulation of Plant UDP-Glucose Pyrophosphorylase [link]Paper   doi   link   bibtex   abstract  
Flavodiiron-mediated O2 photoreduction at photosystem I acceptor-side provides photoprotection to conifer thylakoids in early spring. Bag, P., Shutova, T., Shevela, D., Lihavainen, J., Nanda, S., Ivanov, A. G., Messinger, J., & Jansson, S. Nature Communications, 14(1): 3210. June 2023. Number: 1 Publisher: Nature Publishing Group
Flavodiiron-mediated O2 photoreduction at photosystem I acceptor-side provides photoprotection to conifer thylakoids in early spring [link]Paper   doi   link   bibtex   abstract  
New PEO-IAA-Inspired Anti-Auxins: Synthesis, Biological Activity, and Possible Application in Hemp (Cannabis Sativa L.) Micropropagation. Žukauskaitė, A., Saiz-Fernández, I., Bieleszová, K., Iškauskienė, M., Zhang, C., Smýkalová, I., Dzedulionytė, K., Kubeš, M. F., Sedlářová, M., Pařízková, B., Pavlović, I., Vain, T., Petřík, I., Malinauskienė, V., Šačkus, A., Strnad, M., Robert, S., Napier, R., Novák, O., & Doležal, K. Journal of Plant Growth Regulation. May 2023.
New PEO-IAA-Inspired Anti-Auxins: Synthesis, Biological Activity, and Possible Application in Hemp (Cannabis Sativa L.) Micropropagation [link]Paper   doi   link   bibtex   abstract  
Evolutionary origin and establishment of a dioecious diploid-tetraploid complex. He, L., Guo, F., Cai, X., Chen, H., Lian, C., Wang, Y., Shang, C., Zhang, Y., Wagner, N. D., Zhang, Z., Hörandl, E., & Wang, X. Molecular Ecology, 32(11): 2732–2749. June 2023. _eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1111/mec.16902
Evolutionary origin and establishment of a dioecious diploid-tetraploid complex [link]Paper   doi   link   bibtex   abstract  
Flexible Organic Electronic Ion Pump for Flow-Free Phytohormone Delivery into Vasculature of Intact Plants. Bernacka-Wojcik, I., Talide, L., Abdel Aziz, I., Simura, J., Oikonomou, V. K., Rossi, S., Mohammadi, M., Dar, A. M., Seitanidou, M., Berggren, M., Simon, D. T., Tybrandt, K., Jonsson, M. P., Ljung, K., Niittylä, T., & Stavrinidou, E. Advanced Science, 10(14): 2206409. May 2023. _eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1002/advs.202206409
Flexible Organic Electronic Ion Pump for Flow-Free Phytohormone Delivery into Vasculature of Intact Plants [link]Paper   doi   link   bibtex   abstract  
Amino acid conjugation of oxIAA is a secondary metabolic regulation involved in auxin homeostasis. Brunoni, F., Pěnčík, A., Žukauskaitė, A., Ament, A., Kopečná, M., Collani, S., Kopečný, D., & Novák, O. New Phytologist, 238(6): 2264–2270. June 2023. _eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1111/nph.18887
Amino acid conjugation of oxIAA is a secondary metabolic regulation involved in auxin homeostasis [link]Paper   doi   link   bibtex  
The chromosome-level genome assembly and genes involved in biosynthesis of nervonic acid of Malania oleifera. Yang, T., Zhang, R., Tian, X., Yao, G., Shen, Y., Wang, S., Mao, J., Li, G., Liu, A., Sun, W., & Ma, Y. Scientific Data, 10(1): 298. May 2023. Number: 1 Publisher: Nature Publishing Group
The chromosome-level genome assembly and genes involved in biosynthesis of nervonic acid of Malania oleifera [link]Paper   doi   link   bibtex   abstract  
Functional significance of asymmetrical retention of parental alleles in a hybrid pine species complex. Qu, C., Kao, H., Xu, H., Wang, B., Yang, Z., Yang, Q., Liu, G., Wang, X., Liu, Y., & Zeng, Q. Journal of Systematics and Evolution. March 2023. _eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1111/jse.12953
Functional significance of asymmetrical retention of parental alleles in a hybrid pine species complex [link]Paper   doi   link   bibtex   abstract  
An LRR receptor kinase controls ABC transporter substrate preferences during plant growth-defense decisions. Aryal, B., Xia, J., Hu, Z., Stumpe, M., Tsering, T., Liu, J., Huynh, J., Fukao, Y., Glöckner, N., Huang, H., Sáncho-Andrés, G., Pakula, K., Ziegler, J., Gorzolka, K., Zwiewka, M., Nodzynski, T., Harter, K., Sánchez-Rodríguez, C., Jasiński, M., Rosahl, S., & Geisler, M. M. Current Biology, 33(10): 2008–2023.e8. May 2023.
An LRR receptor kinase controls ABC transporter substrate preferences during plant growth-defense decisions [link]Paper   doi   link   bibtex   abstract  
Threatened forests. Wu, H., & Nilsson, O. EMBO reports, 24(5): e57106. May 2023. Publisher: John Wiley & Sons, Ltd
Threatened forests [link]Paper   doi   link   bibtex   abstract  
Transcriptomics of ivermectin response in Caenorhabditis elegans: Integrating abamectin quantitative trait loci and comparison to the Ivermectin-exposed DA1316 strain. Dube, F., Hinas, A., Delhomme, N., Åbrink, M., Svärd, S., & Tydén, E. PLOS ONE, 18(5): e0285262. 2023. Publisher: Public Library of Science
Transcriptomics of ivermectin response in Caenorhabditis elegans: Integrating abamectin quantitative trait loci and comparison to the Ivermectin-exposed DA1316 strain [link]Paper   doi   link   bibtex   abstract  
Haplotype-resolved genome assembly of Coriaria nepalensis a non-legume nitrogen-fixing shrub. Zhao, S., Guo, J., Kong, L., Nie, S., Yan, X., Shi, T., Tian, X., Ma, H., Bao, Y., Li, Z., Chen, Z., Zhang, R., Ma, Y., El-Kassaby, Y. A., Porth, I., Zhao, W., & Mao, J. Scientific Data, 10(1): 259. May 2023. Number: 1 Publisher: Nature Publishing Group
Haplotype-resolved genome assembly of Coriaria nepalensis a non-legume nitrogen-fixing shrub [link]Paper   doi   link   bibtex   abstract  
QTL mapping of the narrow-branch “Pendula” phenotype in Norway spruce (Picea abies L. Karst.). Gil-Muñoz, F., Bernhardsson, C., Ranade, S. S., Scofield, D. G., Pulkkinen, P. O., Ingvarsson, P. K., & García-Gil, M. R. Tree Genetics & Genomes, 19(3): 28. May 2023.
QTL mapping of the narrow-branch “Pendula” phenotype in Norway spruce (Picea abies L. Karst.) [link]Paper   doi   link   bibtex   abstract  
Chromosome-scale genome assembly and insights into the metabolome and gene regulation of leaf color transition in an important oak species, Quercus dentata. Wang, W., He, X., Yan, X., Ma, B., Lu, C., Wu, J., Zheng, Y., Wang, W., Xue, W., Tian, X., Guo, J., El-Kassaby, Y. A., Porth, I., Leng, P., Hu, Z., & Mao, J. New Phytologist, 238(5): 2016–2032. 2023. _eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1111/nph.18814
Chromosome-scale genome assembly and insights into the metabolome and gene regulation of leaf color transition in an important oak species, Quercus dentata [link]Paper   doi   link   bibtex   abstract  
Formate overflow drives toxic folate trapping in MTHFD1 inhibited cancer cells. Green, A. C., Marttila, P., Kiweler, N., Chalkiadaki, C., Wiita, E., Cookson, V., Lesur, A., Eiden, K., Bernardin, F., Vallin, K. S. A., Borhade, S., Long, M., Ghahe, E. K., Jiménez-Alonso, J. J., Jemth, A., Loseva, O., Mortusewicz, O., Meyers, M., Viry, E., Johansson, A. I., Hodek, O., Homan, E., Bonagas, N., Ramos, L., Sandberg, L., Frödin, M., Moussay, E., Slipicevic, A., Letellier, E., Paggetti, J., Sørensen, C. S., Helleday, T., Henriksson, M., & Meiser, J. Nature Metabolism, 5(4): 642–659. April 2023. Number: 4 Publisher: Nature Publishing Group
Formate overflow drives toxic folate trapping in MTHFD1 inhibited cancer cells [link]Paper   doi   link   bibtex   abstract  
Two florigens and a florigen-like protein form a triple regulatory module at the shoot apical meristem to promote reproductive transitions in rice. Giaume, F., Bono, G. A., Martignago, D., Miao, Y., Vicentini, G., Toriba, T., Wang, R., Kong, D., Cerise, M., Chirivì, D., Biancucci, M., Khahani, B., Morandini, P., Tameling, W., Martinotti, M., Goretti, D., Coupland, G., Kater, M., Brambilla, V., Miki, D., Kyozuka, J., & Fornara, F. Nature Plants, 9(4): 525–534. April 2023. Number: 4 Publisher: Nature Publishing Group
Two florigens and a florigen-like protein form a triple regulatory module at the shoot apical meristem to promote reproductive transitions in rice [link]Paper   doi   link   bibtex   abstract  
The methylation landscape of giga-genome and the epigenetic timer of age in Chinese pine. Li, J., Han, F., Yuan, T., Li, W., Li, Y., Wu, H. X., Wei, H., & Niu, S. Nature Communications, 14(1): 1–11. April 2023. Number: 1 Publisher: Nature Publishing Group
The methylation landscape of giga-genome and the epigenetic timer of age in Chinese pine [link]Paper   doi   link   bibtex   abstract  
Field testing of transgenic aspen from large greenhouse screening identifies unexpected winners. Donev, E. N., Derba-Maceluch, M., Yassin, Z., Gandla, M. L., Pramod, S., Heinonen, E., Kumar, V., Scheepers, G., Vilaplana, F., Johansson, U., Hertzberg, M., Sundberg, B., Winestrand, S., Hörnberg, A., Alriksson, B., Jönsson, L. J., & Mellerowicz, E. J. Plant Biotechnology Journal, 21(5): 1005–1021. 2023. _eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1111/pbi.14012
Field testing of transgenic aspen from large greenhouse screening identifies unexpected winners [link]Paper   doi   link   bibtex   abstract  
Structural elucidation of 3-nitrophenylhydrazine derivatives of tricarboxylic acid cycle acids and optimization of their fragmentation to boost sensitivity in liquid chromatography-mass spectrometry. Hodek, O., Henderson, J., Argemi-Muntadas, L., Khan, A., & Moritz, T. Journal of Chromatography B, 1222: 123719. April 2023.
Structural elucidation of 3-nitrophenylhydrazine derivatives of tricarboxylic acid cycle acids and optimization of their fragmentation to boost sensitivity in liquid chromatography-mass spectrometry [link]Paper   doi   link   bibtex   abstract  
The spectrum of knowledge: integrating knowledge dimensions in the context of forests and climate change. Priebe, J., Hallberg-Sramek, I., Reimerson, E., & Mårald, E. Sustainability Science. March 2023.
The spectrum of knowledge: integrating knowledge dimensions in the context of forests and climate change [link]Paper   doi   link   bibtex   abstract  
SeedTransNet: a directional translational network revealing regulatory patterns during seed maturation and germination. Bai, B., Schiffthaler, B., van der Horst, S., Willems, L., Vergara, A., Karlström, J., Mähler, N., Delhomme, N., Bentsink, L., & Hanson, J. Journal of Experimental Botany, 74(7): 2416–2432. April 2023.
SeedTransNet: a directional translational network revealing regulatory patterns during seed maturation and germination [link]Paper   doi   link   bibtex   abstract  
Genetic markers and tree properties predicting wood biorefining potential in aspen (Populus tremula) bioenergy feedstock. Escamez, S., Robinson, K. M., Luomaranta, M., Gandla, M. L., Mähler, N., Yassin, Z., Grahn, T., Scheepers, G., Stener, L., Jansson, S., Jönsson, L. J., Street, N. R., & Tuominen, H. Biotechnology for Biofuels and Bioproducts, 16(1): 65. April 2023.
Genetic markers and tree properties predicting wood biorefining potential in aspen (Populus tremula) bioenergy feedstock [link]Paper   doi   link   bibtex   abstract  
Preselection of QTL markers enhances accuracy of genomic selection in Norway spruce. Chen, Z., Klingberg, A., Hallingbäck, H. R., & Wu, H. X. BMC Genomics, 24(1): 147. March 2023.
Preselection of QTL markers enhances accuracy of genomic selection in Norway spruce [link]Paper   doi   link   bibtex   abstract  
Mitochondrial ferredoxin-like is essential for forming complex I-containing supercomplexes in Arabidopsis. Röhricht, H., Przybyla-Toscano, J., Forner, J., Boussardon, C., Keech, O., Rouhier, N., & Meyer, E. H Plant Physiology, 191(4): 2170–2184. April 2023.
Mitochondrial ferredoxin-like is essential for forming complex I-containing supercomplexes in Arabidopsis [link]Paper   doi   link   bibtex   abstract  
Rubredoxin 1 promotes the proper folding of D1 and is not required for heme b559 assembly in Chlamydomonas photosystem II. Calderon, R. H., Vitry, C. d., Wollman, F., & Niyogi, K. K. Journal of Biological Chemistry, 299(3). March 2023. Publisher: Elsevier
Rubredoxin 1 promotes the proper folding of D1 and is not required for heme b559 assembly in Chlamydomonas photosystem II [link]Paper   doi   link   bibtex   abstract  
Phylogeography and introgression between Pinus kesiya and Pinus yunnanensis in Southeast Asia. Gao, J., Tomlinson, K. W., Zhao, W., Wang, B., Lapuz, R. S., Liu, J., Pasion, B. O., Hai, B. T., Chanthayod, S., Chen, J., & Wang, X. Journal of Systematics and Evolution, n/a(n/a). January 2023. _eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1111/jse.12949
Phylogeography and introgression between Pinus kesiya and Pinus yunnanensis in Southeast Asia [link]Paper   doi   link   bibtex   abstract  
Unique gene duplications and conserved microsynteny potentially associated with resistance to wood decay in the Lauraceae. Tian, X., Guo, J., Yan, X., Shi, T., Nie, S., Zhao, S., Bao, Y., Li, Z., Kong, L., Su, G., Mao, J., & Lin, J. Frontiers in Plant Science, 14. March 2023.
Unique gene duplications and conserved microsynteny potentially associated with resistance to wood decay in the Lauraceae [link]Paper   link   bibtex   abstract  
Chitosan-Modified Polyethyleneimine Nanoparticles for Enhancing the Carboxylation Reaction and Plants’ CO2 Uptake. Routier, C., Vallan, L., Daguerre, Y., Juvany, M., Istif, E., Mantione, D., Brochon, C., Hadziioannou, G., Strand, Å., Näsholm, T., Cloutet, E., Pavlopoulou, E., & Stavrinidou, E. ACS Nano, 17(4): 3430–3441. February 2023. Publisher: American Chemical Society
Chitosan-Modified Polyethyleneimine Nanoparticles for Enhancing the Carboxylation Reaction and Plants’ CO2 Uptake [link]Paper   doi   link   bibtex   abstract  
Short term starvation potentiates the efficacy of chemotherapy in triple negative breast cancer via metabolic reprogramming. Pateras, I. S., Williams, C., Gianniou, D. D., Margetis, A. T., Avgeris, M., Rousakis, P., Legaki, A., Mirtschink, P., Zhang, W., Panoutsopoulou, K., Delis, A. D., Pagakis, S. N., Tang, W., Ambs, S., Warpman Berglund, U., Helleday, T., Varvarigou, A., Chatzigeorgiou, A., Nordström, A., Tsitsilonis, O. E., Trougakos, I. P., Gilthorpe, J. D., & Frisan, T. Journal of Translational Medicine, 21(1): 169. March 2023.
Short term starvation potentiates the efficacy of chemotherapy in triple negative breast cancer via metabolic reprogramming [link]Paper   doi   link   bibtex   abstract  
Combining scientific and local knowledge improves evaluating future scenarios of forest ecosystem services. Hallberg-Sramek, I., Nordström, E., Priebe, J., Reimerson, E., Mårald, E., & Nordin, A. Ecosystem Services, 60: 101512. April 2023.
Combining scientific and local knowledge improves evaluating future scenarios of forest ecosystem services [link]Paper   doi   link   bibtex   abstract  
Xylan glucuronic acid side chains fix suberin-like aliphatic compounds to wood cell walls. Derba-Maceluch, M., Mitra, M., Hedenström, M., Liu, X., Gandla, M. L., Barbut, F. R., Abreu, I. N., Donev, E. N., Urbancsok, J., Moritz, T., Jönsson, L. J., Tsang, A., Powlowski, J., Master, E. R., & Mellerowicz, E. J. New Phytologist, 238(1): 297–312. January 2023. _eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1111/nph.18712
Xylan glucuronic acid side chains fix suberin-like aliphatic compounds to wood cell walls [link]Paper   doi   link   bibtex   abstract  
Fluorogenic properties of 4-dimethylaminocinnamaldehyde (DMACA) enable high resolution imaging of cell-wall-bound proanthocyanidins in plant root tissues. Chowdhury, J., Ferdous, J., Lihavainen, J., Albrectsen, B. R., & Lundberg-Felten, J. Frontiers in Plant Science, 13. February 2023.
Fluorogenic properties of 4-dimethylaminocinnamaldehyde (DMACA) enable high resolution imaging of cell-wall-bound proanthocyanidins in plant root tissues [link]Paper   doi   link   bibtex   abstract  
Molecular studies of rust on European aspen suggest an autochthonous relationship shaped by genotype. Siddique, A. B., Menke, L., Dinedurga, M., & Albrectsen, B. R. Frontiers in Plant Science, 14. February 2023.
Molecular studies of rust on European aspen suggest an autochthonous relationship shaped by genotype [link]Paper   doi   link   bibtex   abstract  
Physcomitrium patens PpRIC, an ancestral CRIB-domain ROP effector, inhibits auxin-induced differentiation of apical initial cells. Ntefidou, M., Eklund, D. M., Bail, A. L., Schulmeister, S., Scherbel, F., Brandl, L., Dörfler, W., Eichstädt, C., Bannmüller, A., Ljung, K., & Kost, B. Cell Reports, 42(2). February 2023. Publisher: Elsevier
Physcomitrium patens PpRIC, an ancestral CRIB-domain ROP effector, inhibits auxin-induced differentiation of apical initial cells [link]Paper   doi   link   bibtex   abstract  
Oak stands along an elevation gradient have different molecular strategies for regulating bud phenology. Le Provost, G., Lalanne, C., Lesur, I., Louvet, J., Delzon, S., Kremer, A., Labadie, K., Aury, J., Da Silva, C., Moritz, T., & Plomion, C. BMC Plant Biology, 23(1): 108. February 2023.
Oak stands along an elevation gradient have different molecular strategies for regulating bud phenology [link]Paper   doi   link   bibtex   abstract  
Gapless genome assembly of azalea and multi-omics investigation into divergence between two species with distinct flower color. Nie, S., Zhao, S., Shi, T., Zhao, W., Zhang, R., Tian, X., Guo, J., Yan, X., Bao, Y., Li, Z., Kong, L., Ma, H., Chen, Z., Liu, H., El-Kassaby, Y. A, Porth, I., Yang, F., & Mao, J. Horticulture Research, 10(1): uhac241. January 2023.
Gapless genome assembly of azalea and multi-omics investigation into divergence between two species with distinct flower color [link]Paper   doi   link   bibtex   abstract  
Tissue-Specific Isolation of Tagged Arabidopsis Plastids. Boussardon, C., & Keech, O. Current Protocols, 3(2): e673. 2023. _eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1002/cpz1.673
Tissue-Specific Isolation of Tagged Arabidopsis Plastids [link]Paper   doi   link   bibtex   abstract  
Multiple mechanisms behind plant bending. Jonsson, K., Ma, Y., Routier-Kierzkowska, A., & Bhalerao, R. P. Nature Plants, 9(1): 13–21. January 2023.
Multiple mechanisms behind plant bending [link]Paper   doi   link   bibtex   abstract  
Toward understanding the emergence of life: A dual function of the system of nucleotides in the metabolically closed autopoietic organization. Igamberdiev, A. U., & Kleczkowski, L. A. Biosystems, 224: 104837. February 2023.
Toward understanding the emergence of life: A dual function of the system of nucleotides in the metabolically closed autopoietic organization [link]Paper   doi   link   bibtex   abstract  
Species-specific transcriptional reprogramming during adventitious root initiation. Kidwai, M., Mishra, P., & Bellini, C. Trends in Plant Science, 28(2): 128–130. February 2023.
Species-specific transcriptional reprogramming during adventitious root initiation [link]Paper   doi   link   bibtex   abstract  
Transformer-based deep learning for predicting protein properties in the life sciences. Chandra, A., Tünnermann, L., Löfstedt, T., & Gratz, R. eLife, 12: e82819. January 2023.
Transformer-based deep learning for predicting protein properties in the life sciences [link]Paper   doi   link   bibtex   abstract  
Divergent selection predating the Last Glacial Maximum mainly acted on macro-phenotypes in Norway spruce. Tiret, M., Olsson, L., Grahn, T., Karlsson, B., Milesi, P., Lascoux, M., Lundqvist, S., & García-Gil, M. R. Evolutionary Applications, 16(1): 163–172. 2023.
Divergent selection predating the Last Glacial Maximum mainly acted on macro-phenotypes in Norway spruce [link]Paper   doi   link   bibtex   abstract  
The plant trans-Golgi network component ECHIDNA regulates defense, cell death, and endoplasmic reticulum stress. Liu, L., Qin, L., Safdar, L. B., Zhao, C., Cheng, X., Xie, M., Zhang, Y., Gao, F., Bai, Z., Huang, J., Bhalerao, R. P, Liu, S., & Wei, Y. Plant Physiology, 191(1): 558–574. January 2023.
The plant trans-Golgi network component ECHIDNA regulates defense, cell death, and endoplasmic reticulum stress [link]Paper   doi   link   bibtex   abstract  
Cytokinin signaling regulates two-stage inflorescence arrest in Arabidopsis. Walker, C. H, Ware, A., Šimura, J., Ljung, K., Wilson, Z., & Bennett, T. Plant Physiology, 191(1): 479–495. January 2023.
Cytokinin signaling regulates two-stage inflorescence arrest in Arabidopsis [link]Paper   doi   link   bibtex   abstract  
Magnesium and cell energetics: At the junction of metabolism of adenylate and non-adenylate nucleotides. Kleczkowski, L. A., & Igamberdiev, A. U. Journal of Plant Physiology, 280: 153901. January 2023.
Magnesium and cell energetics: At the junction of metabolism of adenylate and non-adenylate nucleotides [link]Paper   doi   link   bibtex   abstract  
Analysis of the ASR and LP3 homologous gene families reveal positive selection acting on LP3-3 gene. Lecoy, J., Ranade, S. S., & García-Gil, M. R. Gene, 850: 146935. January 2023.
Analysis of the ASR and LP3 homologous gene families reveal positive selection acting on LP3-3 gene [link]Paper   doi   link   bibtex   abstract