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  2009 (119)
The phylogeny of uptake hydrogenases in Frankia. Leul, M., Normand, P., & Sellstedt, A. International Microbiology: The Official Journal of the Spanish Society for Microbiology, 12(1): 23–28. March 2009.
doi   link   bibtex   abstract  
Five QTL hotspots for yield in short rotation coppice bioenergy poplar: The Poplar Biomass Loci. Rae, A. M., Street, N. R., Robinson, K. M., Harris, N., & Taylor, G. BMC Plant Biology, 9(1): 1–13. December 2009. Number: 1 Publisher: BioMed Central
Five QTL hotspots for yield in short rotation coppice bioenergy poplar: The Poplar Biomass Loci [link]Paper   doi   link   bibtex   abstract  
Gibberellin Signaling in the Endodermis Controls Arabidopsis Root Meristem Size. Ubeda-Tomás, S., Federici, F., Casimiro, I., Beemster, G. T., Bhalerao, R. P., Swarup, R., Doerner, P., Haseloff, J., & Bennett, M. J. Current Biology, 19(14): 1194–1199. July 2009.
Gibberellin Signaling in the Endodermis Controls Arabidopsis Root Meristem Size [link]Paper   doi   link   bibtex  
Hierarchical Spatial Modeling of Additive and Dominance Genetic Variance for Large Spatial Trial Datasets. Finley, A. O., Banerjee, S., Waldmann, P., & Ericsson, T. Biometrics, 65(2): 441–451. June 2009.
Hierarchical Spatial Modeling of Additive and Dominance Genetic Variance for Large Spatial Trial Datasets [link]Paper   doi   link   bibtex  
Genetic variation among and within populations of Cordia africana in seed size and germination responses to constant temperatures. Loha, A., Tigabu, M., & Fries, A. Euphytica, 165(1): 189–196. January 2009.
Genetic variation among and within populations of Cordia africana in seed size and germination responses to constant temperatures [link]Paper   doi   link   bibtex  
Chapter 2 Cold Signalling and Cold Acclimation in Plants. Ruelland, E., Vaultier, M., Zachowski, A., & Hurry, V. In Advances in Botanical Research, volume 49, pages 35–150. Elsevier, 2009.
Chapter 2 Cold Signalling and Cold Acclimation in Plants [link]Paper   doi   link   bibtex  
Decreased Mitochondrial Activities of Malate Dehydrogenase and Fumarase in Tomato Lead to Altered Root Growth and Architecture via Diverse Mechanisms. van der Merwe, M. J., Osorio, S., Moritz, T., Nunes-Nesi, A., & Fernie, A. R. Plant Physiology, 149(2): 653–669. February 2009.
Decreased Mitochondrial Activities of Malate Dehydrogenase and Fumarase in Tomato Lead to Altered Root Growth and Architecture via Diverse Mechanisms [link]Paper   doi   link   bibtex   abstract  
The Arabidopsis IRX10 and IRX10-LIKE glycosyltransferases are critical for glucuronoxylan biosynthesis during secondary cell wall formation. Wu, A., Rihouey, C., Seveno, M., Hörnblad, E., Singh, S. K., Matsunaga, T., Ishii, T., Lerouge, P., & Marchant, A. The Plant Journal, 57(4): 718–731. February 2009.
The Arabidopsis IRX10 and IRX10-LIKE glycosyltransferases are critical for glucuronoxylan biosynthesis during secondary cell wall formation [link]Paper   doi   link   bibtex  
Long-term effects of prescribed early fire, grazing and selective tree cutting on seedling populations in the Sudanian savanna of Burkina Faso. Zida, D., Tigabu, M., Sawadogo, L., Tiveau, D., & Odén, P. C. African Journal of Ecology, 47(1): 97–108. March 2009.
Long-term effects of prescribed early fire, grazing and selective tree cutting on seedling populations in the Sudanian savanna of Burkina Faso [link]Paper   doi   link   bibtex  
Can small-scale experiments predict ecosystem responses? An example from peatlands. Wiedermann, M. M., Gunnarsson, U., Nilsson, M. B., Nordin, A., & Ericson, L. Oikos, 118(3): 449–456. March 2009.
Can small-scale experiments predict ecosystem responses? An example from peatlands [link]Paper   doi   link   bibtex  
Modular gene expression in Poplar: a multilayer network approach. Grönlund, A., Bhalerao, R. P., & Karlsson, J. New Phytologist, 181(2): 315–322. January 2009.
Modular gene expression in Poplar: a multilayer network approach [link]Paper   doi   link   bibtex  
Speciation in aqueous vanadate–ligand and peroxovanadate–ligand systems. Gorzsás, A., Andersson, I., & Pettersson, L. Journal of Inorganic Biochemistry, 103(4): 517–526. April 2009.
Speciation in aqueous vanadate–ligand and peroxovanadate–ligand systems [link]Paper   doi   link   bibtex   abstract  
A Comprehensive Analysis of the Structure-Function Relationship in Proteins Based on Local Structure Similarity. Hvidsten, T. R., Lægreid, A., Kryshtafovych, A., Andersson, G., Fidelis, K., & Komorowski, J. PLOS ONE, 4(7): e6266. July 2009. Publisher: Public Library of Science
A Comprehensive Analysis of the Structure-Function Relationship in Proteins Based on Local Structure Similarity [link]Paper   doi   link   bibtex   abstract  
Genome-wide profiling of populus small RNAs. Klevebring, D., Street, N. R., Fahlgren, N., Kasschau, K. D., Carrington, J. C., Lundeberg, J., & Jansson, S. BMC genomics, 10: 620. December 2009.
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Sugar perception and signaling–an update. Hanson, J., & Smeekens, S. Current Opinion in Plant Biology, 12(5): 562–567. October 2009.
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Sucrose-mediated translational control. Hummel, M., Rahmani, F., Smeekens, S., & Hanson, J. Annals of Botany, 104(1): 1–7. July 2009.
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Sucrose control of translation mediated by an upstream open reading frame-encoded peptide. Rahmani, F., Hummel, M., Schuurmans, J., Wiese-Klinkenberg, A., Smeekens, S., & Hanson, J. Plant Physiology, 150(3): 1356–1367. July 2009.
doi   link   bibtex   abstract  
Expression patterns within the Arabidopsis C/S1 bZIP transcription factor network: availability of heterodimerization partners controls gene expression during stress response and development. Weltmeier, F., Rahmani, F., Ehlert, A., Dietrich, K., Schütze, K., Wang, X., Chaban, C., Hanson, J., Teige, M., Harter, K., Vicente-Carbajosa, J., Smeekens, S., & Dröge-Laser, W. Plant Molecular Biology, 69(1-2): 107–119. January 2009.
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Powerful partners: Arabidopsis and chemical genomics. Robert, S., Raikhel, N. V., & Hicks, G. R. The Arabidopsis Book, 7: e0109. 2009.
doi   link   bibtex   abstract  
Stem cell function during plant vascular development. Elo, A., Immanen, J., Nieminen, K., & Helariutta, Y. Seminars in Cell & Developmental Biology, 20(9): 1097–1106. December 2009.
Stem cell function during plant vascular development [link]Paper   doi   link   bibtex  
Chemical dissection of endosomal pathways. Drakakaki, G., Robert, S., Raikhel, N. V, & Hicks, G. R Plant Signaling & Behavior, 4(1): 57–62. January 2009.
Chemical dissection of endosomal pathways [link]Paper   link   bibtex   abstract  
The role and regulation of the tricarboxylic acid cycle in Solanum lycopersicum roots. Van der Merwe, M., Osorio, S., Moritz, T., Nunes-Nesi, A., & Fernie, A. South African Journal of Botany, 75(2): 424. April 2009.
The role and regulation of the tricarboxylic acid cycle in Solanum lycopersicum roots [link]Paper   doi   link   bibtex  
A Real-Time Fluorogenic Assay for the Visualization of Glycoside Hydrolase Activity in Planta. Ibatullin, F. M., Banasiak, A., Baumann, M. J., Greffe, L., Takahashi, J., Mellerowicz, E. J., & Brumer, H. Plant Physiology, 151(4): 1741–1750. December 2009.
A Real-Time Fluorogenic Assay for the Visualization of Glycoside Hydrolase Activity in Planta [link]Paper   doi   link   bibtex  
The TL29 Protein is Lumen Located, Associated with PSII and Not an Ascorbate Peroxidase. Granlund, I., Storm, P., Schubert, M., García-Cerdán, J. G., Funk, C., & Schröder, W. P. Plant and Cell Physiology, 50(11): 1898–1910. November 2009.
The TL29 Protein is Lumen Located, Associated with PSII and Not an Ascorbate Peroxidase [link]Paper   doi   link   bibtex  
Plant Evolution: Measuring the Length of the Day. Nilsson, O. Current Biology, 19(7): R302–R303. April 2009.
Plant Evolution: Measuring the Length of the Day [link]Paper   doi   link   bibtex  
The Ectomycorrhizal Fungus Laccaria bicolor Stimulates Lateral Root Formation in Poplar and Arabidopsis through Auxin Transport and Signaling. Felten, J., Kohler, A., Morin, E., Bhalerao, R. P., Palme, K., Martin, F., Ditengou, F. A., & Legué, V. Plant Physiology, 151(4): 1991–2005. December 2009.
The Ectomycorrhizal Fungus <i>Laccaria bicolor</i> Stimulates Lateral Root Formation in Poplar and Arabidopsis through Auxin Transport and Signaling [link]Paper   doi   link   bibtex   abstract  
Pectinous cell wall thickenings formation—A response of moss protonemata cells to lead. Krzeslowska, M, Lenartowska, M, Mellerowicz, E, Samardakiewicz, S, & Wozny, A Environmental and Experimental Botany, 65(1): 119–131. January 2009.
Pectinous cell wall thickenings formation—A response of moss protonemata cells to lead [link]Paper   doi   link   bibtex  
Mutants, Overexpressors, and Interactors of Arabidopsis Plastocyanin Isoforms: Revised Roles of Plastocyanin in Photosynthetic Electron Flow and Thylakoid Redox State. Pesaresi, P., Scharfenberg, M., Weigel, M., Granlund, I., Schröder, W. P., Finazzi, G., Rappaport, F., Masiero, S., Furini, A., Jahns, P., & Leister, D. Molecular Plant, 2(2): 236–248. March 2009.
Mutants, Overexpressors, and Interactors of Arabidopsis Plastocyanin Isoforms: Revised Roles of Plastocyanin in Photosynthetic Electron Flow and Thylakoid Redox State [link]Paper   doi   link   bibtex  
Model organisms - A journey from the dawn of biological research to the post-genomic era. Pacurar, D. Romanian Biotechnological Letters Biological Sciences REVIEW, 14: 4087–4094. January 2009.
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Juvenile-mature wood transition in pine: correlation between wood properties and candidate gene expression profiles. Kumar, M., Saranpää, P., Barnett, J. R., & Wilkinson, M. J. Euphytica, 166(3): 341–355. April 2009.
Juvenile-mature wood transition in pine: correlation between wood properties and candidate gene expression profiles [link]Paper   doi   link   bibtex  
Hormone interactions during vascular development. Dettmer, J., Elo, A., & Helariutta, Y. Plant Molecular Biology, 69(4): 347–360. March 2009.
Hormone interactions during vascular development [link]Paper   doi   link   bibtex  
Optimization of selection contribution and mate allocations in monoecious tree breeding populations. Hallander, J., & Waldmann, P. BMC Genetics, 10(1): 70. December 2009.
Optimization of selection contribution and mate allocations in monoecious tree breeding populations [link]Paper   doi   link   bibtex  
Complex Biotic Interactions Drive Long-Term Vegetation Change in a Nitrogen Enriched Boreal Forest. Nordin, A., Strengbom, J., Forsum, Å., & Ericson, L. Ecosystems, 12(7): 1204–1211. November 2009.
Complex Biotic Interactions Drive Long-Term Vegetation Change in a Nitrogen Enriched Boreal Forest [link]Paper   doi   link   bibtex  
Ethylene levels are regulated by a plant encoded 1-aminocyclopropane-1-carboxylic acid deaminase. McDonnell, L., Plett, J. M., Andersson-Gunnerås, S., Kozela, C., Dugardeyn, J., Van Der Straeten, D., Glick, B. R., Sundberg, B., & Regan, S. Physiologia Plantarum, 136(1): 94–109. May 2009.
Ethylene levels are regulated by a plant encoded 1-aminocyclopropane-1-carboxylic acid deaminase [link]Paper   doi   link   bibtex  
Peptidyl–Prolyl Isomerase Activity in Chloroplast Thylakoid Lumen is a Dispensable Function of Immunophilins in Arabidopsis thaliana. Ingelsson, B., Shapiguzov, A., Kieselbach, T., & Vener, A. V. Plant and Cell Physiology, 50(10): 1801–1814. October 2009.
Peptidyl–Prolyl Isomerase Activity in Chloroplast Thylakoid Lumen is a Dispensable Function of Immunophilins in Arabidopsis thaliana [link]Paper   doi   link   bibtex  
Genetic correlations among juvenile wood quality and growth traits and implications for selection strategy in Pinus radiata D. Don. Gapare, W. J., Baltunis, B. S., Ivković, M., & Wu, H. X. Annals of Forest Science, 66(6): 606–606. January 2009.
Genetic correlations among juvenile wood quality and growth traits and implications for selection strategy in Pinus radiata D. Don [link]Paper   doi   link   bibtex   abstract  
Generation and analysis of expressed sequence tags from six developing xylem libraries in Pinus radiata D. Don. Li, X., Wu, H. X., Dillon, S. K., & Southerton, S. G. BMC genomics, 10: 41. January 2009.
doi   link   bibtex   abstract  
Discussion on Role of Forest to Control Agricultural Non-Point Source Pollution in Taihu Lake Basin-Based on Source-Sink Analysis. Zhang, J., Jiang, J., Zhang, Z., Shan, Q., Chen, G., Wang, Y., Xu, Y., Wu, H., & Abarquez, A. Journal of Water Resource and Protection, 1(5): 345–350. November 2009. Number: 5 Publisher: Scientific Research Publishing
Discussion on Role of Forest to Control Agricultural Non-Point Source Pollution in Taihu Lake Basin-Based on Source-Sink Analysis [link]Paper   doi   link   bibtex   abstract  
Comparisons of genetic parameters and clonal value predictions from clonal trials and seedling base population trials of radiata pine. Baltunis, B. S., Wu, H. X., Dungey, H. S., Mullin, T. J. “., & Brawner, J. T. Tree Genetics & Genomes, 5(1): 269–278. January 2009.
Comparisons of genetic parameters and clonal value predictions from clonal trials and seedling base population trials of radiata pine [link]Paper   doi   link   bibtex   abstract  
Domain-specific determinants of catalysis/substrate binding and the oligomerization status of barley UDP-glucose pyrophosphorylase. Meng, M., Fitzek, E., Gajowniczek, A., Wilczynska, M., & Kleczkowski, L. A. Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics, 1794(12): 1734–1742. December 2009.
Domain-specific determinants of catalysis/substrate binding and the oligomerization status of barley UDP-glucose pyrophosphorylase [link]Paper   doi   link   bibtex  
Changing sugar partitioning in FBPase-manipulated plants. Serrato, A. J., de Dios Barajas-Lopez, J., Chueca, A., & Sahrawy, M. Journal of Experimental Botany, 60(10): 2923–2931. July 2009.
Changing sugar partitioning in FBPase-manipulated plants [link]Paper   doi   link   bibtex  
Cellular processes relying on sterol function in plants. Boutté, Y., & Grebe, M. Current Opinion in Plant Biology, 12(6): 705–713. December 2009.
Cellular processes relying on sterol function in plants [link]Paper   doi   link   bibtex  
The Photosystem II Light-Harvesting Protein Lhcb3 Affects the Macrostructure of Photosystem II and the Rate of State Transitions in Arabidopsis. Damkjær, J. T., Kereïche, S., Johnson, M. P., Kovacs, L., Kiss, A. Z., Boekema, E. J., Ruban, A. V., Horton, P., & Jansson, S. The Plant Cell, 21(10): 3245–3256. December 2009.
The Photosystem II Light-Harvesting Protein Lhcb3 Affects the Macrostructure of Photosystem II and the Rate of State Transitions in <i>Arabidopsis</i> [link]Paper   doi   link   bibtex   abstract  
Optimization of procedures for collecting and storing of CSF for studying the metabolome in ALS. Wuolikainen, A., Hedenström, M., Moritz, T., Marklund, S. L., Antti, H., & Andersen, P. M. Amyotrophic Lateral Sclerosis, 10(4): 229–236. January 2009.
Optimization of procedures for collecting and storing of CSF for studying the metabolome in ALS [link]Paper   doi   link   bibtex  
Compensation for Systematic Cross-Contribution Improves Normalization of Mass Spectrometry Based Metabolomics Data. Redestig, H., Fukushima, A., Stenlund, H., Moritz, T., Arita, M., Saito, K., & Kusano, M. Analytical Chemistry, 81(19): 7974–7980. October 2009.
Compensation for Systematic Cross-Contribution Improves Normalization of Mass Spectrometry Based Metabolomics Data [link]Paper   doi   link   bibtex  
Phenotypic Plasticity of Adventitious Rooting in Arabidopsis Is Controlled by Complex Regulation of AUXIN RESPONSE FACTOR Transcripts and MicroRNA Abundance. Gutierrez, L., Bussell, J. D., Păcurar, D. I., Schwambach, J., Păcurar, M., & Bellini, C. The Plant Cell, 21(10): 3119–3132. December 2009.
Phenotypic Plasticity of Adventitious Rooting in <i>Arabidopsis</i> Is Controlled by Complex Regulation of AUXIN RESPONSE FACTOR Transcripts and MicroRNA Abundance [link]Paper   doi   link   bibtex   abstract  
Abscisic Acid Represses Growth of the Arabidopsis Embryonic Axis after Germination by Enhancing Auxin Signaling. Belin, C., Megies, C., Hauserová, E., & Lopez-Molina, L. The Plant Cell, 21(8): 2253–2268. October 2009.
Abscisic Acid Represses Growth of the <i>Arabidopsis</i> Embryonic Axis after Germination by Enhancing Auxin Signaling [link]Paper   doi   link   bibtex   abstract  
REVEILLE1, a Myb-like transcription factor, integrates the circadian clock and auxin pathways. Rawat, R., Schwartz, J., Jones, M. A., Sairanen, I., Cheng, Y., Andersson, C. R., Zhao, Y., Ljung, K., & Harmer, S. L. Proceedings of the National Academy of Sciences, 106(39): 16883–16888. September 2009.
REVEILLE1, a Myb-like transcription factor, integrates the circadian clock and auxin pathways [link]Paper   doi   link   bibtex  
Control of bud activation by an auxin transport switch. Prusinkiewicz, P., Crawford, S., Smith, R. S., Ljung, K., Bennett, T., Ongaro, V., & Leyser, O. Proceedings of the National Academy of Sciences, 106(41): 17431–17436. October 2009.
Control of bud activation by an auxin transport switch [link]Paper   doi   link   bibtex  
Identification of Lignin and Polysaccharide Modifications in Populus Wood by Chemometric Analysis of 2D NMR Spectra from Dissolved Cell Walls. Hedenström, M., Wiklund-Lindström, S., Öman, T., Lu, F., Gerber, L., Schatz, P., Sundberg, B., & Ralph, J. Molecular Plant, 2(5): 933–942. September 2009.
Identification of Lignin and Polysaccharide Modifications in Populus Wood by Chemometric Analysis of 2D NMR Spectra from Dissolved Cell Walls [link]Paper   doi   link   bibtex  
Identifying New Components Participating in the Secondary Cell Wall Formation of Vessel Elements in Zinnia and Arabidopsis. Endo, S., Pesquet, E., Yamaguchi, M., Tashiro, G., Sato, M., Toyooka, K., Nishikubo, N., Udagawa-Motose, M., Kubo, M., Fukuda, H., & Demura, T. The Plant Cell, 21(4): 1155–1165. May 2009.
Identifying New Components Participating in the Secondary Cell Wall Formation of Vessel Elements in <i>Zinnia</i> and <i>Arabidopsis</i> [link]Paper   doi   link   bibtex   abstract  
The AUXIN BINDING PROTEIN 1 Is Required for Differential Auxin Responses Mediating Root Growth. Tromas, A., Braun, N., Muller, P., Khodus, T., Paponov, I. A., Palme, K., Ljung, K., Lee, J., Benfey, P., Murray, J. A. H., Scheres, B., & Perrot-Rechenmann, C. PLoS ONE, 4(9): e6648. September 2009.
The AUXIN BINDING PROTEIN 1 Is Required for Differential Auxin Responses Mediating Root Growth [link]Paper   doi   link   bibtex  
Auxin transport into cotyledons and cotyledon growth depend similarly on the ABCB19 Multidrug Resistance-like transporter. Lewis, D. R., Wu, G., Ljung, K., & Spalding, E. P. The Plant Journal, 60(1): 91–101. October 2009.
Auxin transport into cotyledons and cotyledon growth depend similarly on the ABCB19 Multidrug Resistance-like transporter [link]Paper   doi   link   bibtex  
Metabolic systems maintain stable non-equilibrium via thermodynamic buffering. Igamberdiev, A. U., & Kleczkowski, L. A. BioEssays, 31(10): 1091–1099. October 2009.
Metabolic systems maintain stable non-equilibrium via thermodynamic buffering [link]Paper   doi   link   bibtex  
Structural characterisation of the pectic polysaccharide rhamnogalacturonan II using an acidic fingerprinting methodology. Séveno, M., Voxeur, A., Rihouey, C., Wu, A., Ishii, T., Chevalier, C., Ralet, M. C., Driouich, A., Marchant, A., & Lerouge, P. Planta, 230(5): 947–957. October 2009.
Structural characterisation of the pectic polysaccharide rhamnogalacturonan II using an acidic fingerprinting methodology [link]Paper   doi   link   bibtex  
Changes in growth performance and fecundity of Eucalyptus camaldulensis and E. tereticornis during domestication in southern India. Varghese, M., Kamalakannan, R., Harwood, C. E., Lindgren, D., & McDonald, M. W. Tree Genetics & Genomes, 5(4): 629–640. October 2009.
Changes in growth performance and fecundity of Eucalyptus camaldulensis and E. tereticornis during domestication in southern India [link]Paper   doi   link   bibtex  
Metabolomic evaluation of pulsed electric field-induced stress on potato tissue. Galindo, F. G., Dejmek, P., Lundgren, K., Rasmusson, A. G., Vicente, A., & Moritz, T. Planta, 230(3): 469–479. August 2009.
Metabolomic evaluation of pulsed electric field-induced stress on potato tissue [link]Paper   doi   link   bibtex  
Production of imidazole alkaloids in cell cultures of jaborandi as affected by the medium pH. Andreazza, N. L., Abreu, I. N., Sawaya, A. C. H. F., Eberlin, M. N., & Mazzafera, P. Biotechnology Letters, 31(4): 607–614. April 2009.
Production of imidazole alkaloids in cell cultures of jaborandi as affected by the medium pH [link]Paper   doi   link   bibtex  
An Fe Deficiency Responsive Element with a Core Sequence of TGGCA Regulates the Expression of FEA1 in Chlamydomonas reinharditii. Fei, X., Eriksson, M., Yang, J., & Deng, X. Journal of Biochemistry, 146(2): 157–166. August 2009.
An Fe Deficiency Responsive Element with a Core Sequence of TGGCA Regulates the Expression of FEA1 in Chlamydomonas reinharditii [link]Paper   doi   link   bibtex  
Chapter 1 Cytokinin Signaling During Root Development. Bishopp, A., Help, H., & Helariutta, Y. In International Review of Cell and Molecular Biology, volume 276, pages 1–48. Elsevier, 2009.
Chapter 1 Cytokinin Signaling During Root Development [link]Paper   doi   link   bibtex  
Quantification of indole-3-acetic acid from plant associated Bacillus spp. and their phytostimulatory effect on Vigna radiata (L.). Ali, B., Sabri, A. N., Ljung, K., & Hasnain, S. World Journal of Microbiology and Biotechnology, 25(3): 519–526. March 2009.
Quantification of indole-3-acetic acid from plant associated Bacillus spp. and their phytostimulatory effect on Vigna radiata (L.) [link]Paper   doi   link   bibtex  
Analyses of GA20ox- and GID1-over-expressing aspen suggest that gibberellins play two distinct roles in wood formation. Mauriat, M., & Moritz, T. The Plant Journal: For Cell and Molecular Biology, 58(6): 989–1003. June 2009.
doi   link   bibtex   abstract  
Turning a Wild Plant Into a Model - A deja vu Story. Pacurar, D. Notulae Botanicae Horti Agrobotanici Cluj-Napoca, 37. June 2009.
doi   link   bibtex   abstract  
Examination of multiple disturbances effects on herbaceous vegetation communities in the Sudanian savanna-woodland of West Africa. Savadogo, P., Tigabu, M., Sawadogo, L., & Odén, P. C. Flora - Morphology, Distribution, Functional Ecology of Plants, 204(6): 409–422. January 2009.
Examination of multiple disturbances effects on herbaceous vegetation communities in the Sudanian savanna-woodland of West Africa [link]Paper   doi   link   bibtex  
Identification and characterization of a matrix metalloproteinase (Pta1-MMP) expressed during Loblolly pine (Pinus taeda) seed development, germination completion, and early seedling establishment. Ratnaparkhe, S. M., Egertsdotter, E. M. U., & Flinn, B. S. Planta, 230(2): 339–354. July 2009.
Identification and characterization of a matrix metalloproteinase (Pta1-MMP) expressed during Loblolly pine (Pinus taeda) seed development, germination completion, and early seedling establishment [link]Paper   doi   link   bibtex  
Genetic parameters for early wood and latewood densities and development with increasing age in Scots pine. Fries, A., & Ericsson, T. Annals of Forest Science, 66(4): 404–404. January 2009.
Genetic parameters for early wood and latewood densities and development with increasing age in Scots pine [link]Paper   doi   link   bibtex  
Predictive Metabolomics Evaluation of Nutrition-Modulated Metabolic Stress Responses in Human Blood Serum During the Early Recovery Phase of Strenuous Physical Exercise. Chorell, E., Moritz, T., Branth, S., Antti, H., & Svensson, M. B. Journal of Proteome Research, 8(6): 2966–2977. June 2009.
Predictive Metabolomics Evaluation of Nutrition-Modulated Metabolic Stress Responses in Human Blood Serum During the Early Recovery Phase of Strenuous Physical Exercise [link]Paper   doi   link   bibtex  
Local and systemic transcriptome responses to herbivory and jasmonic acid in Populus. Babst, B. A., Sjödin, A., Jansson, S., & Orians, C. M. Tree Genetics & Genomes, 5(3): 459–474. July 2009.
Local and systemic transcriptome responses to herbivory and jasmonic acid in Populus [link]Paper   doi   link   bibtex  
Evolution of rogue waves in interacting wave systems. Grönlund, A., Eliasson, B., & Marklund, M. EPL (Europhysics Letters), 86(2): 24001. April 2009.
Evolution of rogue waves in interacting wave systems [link]Paper   doi   link   bibtex  
A novel extended family of stromal thioredoxins. Cain, P., Hall, M., Schröder, W. P., Kieselbach, T., & Robinson, C. Plant Molecular Biology, 70(3): 273–281. June 2009.
A novel extended family of stromal thioredoxins [link]Paper   doi   link   bibtex  
Ectomycorrhizal fungal community in alkaline-saline soil in northeastern China. Ishida, T. A., Nara, K., Ma, S., Takano, T., & Liu, S. Mycorrhiza, 19(5): 329–335. June 2009.
Ectomycorrhizal fungal community in alkaline-saline soil in northeastern China [link]Paper   doi   link   bibtex  
An update on the nomenclature for the cellulose synthase genes in Populus. Kumar, M., Thammannagowda, S., Bulone, V., Chiang, V., Han, K., Joshi, C. P., Mansfield, S. D., Mellerowicz, E., Sundberg, B., Teeri, T., & Ellis, B. E. Trends in Plant Science, 14(5): 248–254. May 2009.
An update on the nomenclature for the cellulose synthase genes in Populus [link]Paper   doi   link   bibtex  
An Auxin Gradient and Maximum in the Arabidopsis Root Apex Shown by High-Resolution Cell-Specific Analysis of IAA Distribution and Synthesis. Petersson, S. V., Johansson, A. I., Kowalczyk, M., Makoveychuk, A., Wang, J. Y., Moritz, T., Grebe, M., Benfey, P. N., Sandberg, G., & Ljung, K. The Plant Cell, 21(6): 1659–1668. August 2009.
An Auxin Gradient and Maximum in the <i>Arabidopsis</i> Root Apex Shown by High-Resolution Cell-Specific Analysis of IAA Distribution and Synthesis [link]Paper   doi   link   bibtex   abstract  
Role of the Ndc1 interaction network in yeast nuclear pore complex assembly and maintenance. Onischenko, E., Stanton, L. H., Madrid, A. S., Kieselbach, T., & Weis, K. Journal of Cell Biology, 185(3): 475–491. May 2009.
Role of the Ndc1 interaction network in yeast nuclear pore complex assembly and maintenance [link]Paper   doi   link   bibtex   abstract  
Light Induced Changes in Protein Expression and Uniform Regulation of Transcription in the Thylakoid Lumen of Arabidopsis thaliana. Granlund, I., Hall, M., Kieselbach, T., & Schröder, W. P. PLoS ONE, 4(5): e5649. May 2009.
Light Induced Changes in Protein Expression and Uniform Regulation of Transcription in the Thylakoid Lumen of Arabidopsis thaliana [link]Paper   doi   link   bibtex  
UDP-Glucose Pyrophosphorylase is not Rate Limiting, but is Essential in Arabidopsis. Meng, M., Geisler, M., Johansson, H., Harholt, J., Scheller, H. V., Mellerowicz, E. J., & Kleczkowski, L. A. Plant and Cell Physiology, 50(5): 998–1011. May 2009.
UDP-Glucose Pyrophosphorylase is not Rate Limiting, but is Essential in Arabidopsis [link]Paper   doi   link   bibtex  
A regulated auxin minimum is required for seed dispersal in Arabidopsis. Sorefan, K., Girin, T., Liljegren, S. J., Ljung, K., Robles, P., Galván-Ampudia, C. S., Offringa, R., Friml, J., Yanofsky, M. F., & Østergaard, L. Nature, 459(7246): 583–586. May 2009.
A regulated auxin minimum is required for seed dispersal in Arabidopsis [link]Paper   doi   link   bibtex  
Magic‐angle phosphorus NMR of functional mitochondria: in situ monitoring of lipid response under apoptotic‐like stress. Sani, M., Keech, O., Gardeström, P., Dufourc, E. J., & Gröbner, G. The FASEB Journal, 23(9): 2872–2878. September 2009.
Magic‐angle phosphorus NMR of functional mitochondria: <i>in situ</i> monitoring of lipid response under apoptotic‐like stress [link]Paper   doi   link   bibtex  
Comparison of Quantitative Metabolite Imaging Tools and Carbon-13 Techniques for Fluxomics. Niittylae, T., Chaudhuri, B., Sauer, U., & Frommer, W. B. In Belostotsky, D. A., editor(s), Plant Systems Biology, volume 553, pages 355–372. Humana Press, Totowa, NJ, 2009. Series Title: Methods in Molecular Biology™
Comparison of Quantitative Metabolite Imaging Tools and Carbon-13 Techniques for Fluxomics [link]Paper   doi   link   bibtex  
Amyloid Formation by the Pro-Inflammatory S100A8/A9 Proteins in the Ageing Prostate. Yanamandra, K., Alexeyev, O., Zamotin, V., Srivastava, V., Shchukarev, A., Brorsson, A., Tartaglia, G. G., Vogl, T., Kayed, R., Wingsle, G., Olsson, J., Dobson, C. M., Bergh, A., Elgh, F., & Morozova-Roche, L. A. PLoS ONE, 4(5): e5562. May 2009.
Amyloid Formation by the Pro-Inflammatory S100A8/A9 Proteins in the Ageing Prostate [link]Paper   doi   link   bibtex  
Variation in spring and autumn frost tolerance among provenances of Russian larches ( Larix Mill.). Eysteinsson, T., Karlman, L., Fries, A., Martinsson, O., & Skúlason, B. Scandinavian Journal of Forest Research, 24(2): 100–110. April 2009.
Variation in spring and autumn frost tolerance among provenances of Russian larches ( <i>Larix</i> Mill.) [link]Paper   doi   link   bibtex  
Effects of Sampling Time and Nitrogen Fertilization on Anthocyanidin Levels in Vaccinium myrtillus Fruits. Åkerström, A., Forsum, Å., Rumpunen, K., Jäderlund, A., & Bång, U. Journal of Agricultural and Food Chemistry, 57(8): 3340–3345. April 2009.
Effects of Sampling Time and Nitrogen Fertilization on Anthocyanidin Levels in <i>Vaccinium myrtillus</i> Fruits [link]Paper   doi   link   bibtex  
Local auxin biosynthesis modulates gradient-directed planar polarity in Arabidopsis. Ikeda, Y., Men, S., Fischer, U., Stepanova, A. N., Alonso, J. M., Ljung, K., & Grebe, M. Nature Cell Biology, 11(6): 731–738. June 2009.
Local auxin biosynthesis modulates gradient-directed planar polarity in Arabidopsis [link]Paper   doi   link   bibtex  
Low temperature maximizes growth of Crocus vernus (L.) Hill via changes in carbon partitioning and corm development. Lundmark, M., Hurry, V., & Lapointe, L. Journal of Experimental Botany, 60(7): 2203–2213. May 2009.
Low temperature maximizes growth of Crocus vernus (L.) Hill via changes in carbon partitioning and corm development [link]Paper   doi   link   bibtex  
Comparative Genomic Study of the Thioredoxin Family in Photosynthetic Organisms with Emphasis on Populus trichocarpa. Chibani, K., Wingsle, G., Jacquot, J., Gelhaye, E., & Rouhier, N. Molecular Plant, 2(2): 308–322. March 2009.
Comparative Genomic Study of the Thioredoxin Family in Photosynthetic Organisms with Emphasis on Populus trichocarpa [link]Paper   doi   link   bibtex  
Using multi-data hidden Markov models trained on local neighborhoods of protein structure to predict residue–residue contacts. Björkholm, P., Daniluk, P., Kryshtafovych, A., Fidelis, K., Andersson, R., & Hvidsten, T. R. Bioinformatics, 25(10): 1264–1270. May 2009.
Using multi-data hidden Markov models trained on local neighborhoods of protein structure to predict residue–residue contacts [link]Paper   doi   link   bibtex  
KORRIGAN1 and its Aspen Homolog PttCel9A1 Decrease Cellulose Crystallinity in Arabidopsis Stems. Takahashi, J., Rudsander, U. J., Hedenström, M., Banasiak, A., Harholt, J., Amelot, N., Immerzeel, P., Ryden, P., Endo, S., Ibatullin, F. M., Brumer, H., del Campillo, E., Master, E. R., Vibe Scheller, H., Sundberg, B., Teeri, T. T., & Mellerowicz, E. J. Plant and Cell Physiology, 50(6): 1099–1115. June 2009.
KORRIGAN1 and its Aspen Homolog PttCel9A1 Decrease Cellulose Crystallinity in Arabidopsis Stems [link]Paper   doi   link   bibtex  
Auxin production by plant associated bacteria: impact on endogenous IAA content and growth of Triticum aestivum L. Ali, B., Sabri, A., Ljung, K., & Hasnain, S. Letters in Applied Microbiology, 48(5): 542–547. May 2009.
Auxin production by plant associated bacteria: impact on endogenous IAA content and growth of <i>Triticum aestivum</i> L. [link]Paper   doi   link   bibtex  
Ethylene is an endogenous stimulator of cell division in the cambial meristem of Populus. Love, J., Bjorklund, S., Vahala, J., Hertzberg, M., Kangasjarvi, J., & Sundberg, B. Proceedings of the National Academy of Sciences, 106(14): 5984–5989. April 2009.
Ethylene is an endogenous stimulator of cell division in the cambial meristem of Populus [link]Paper   doi   link   bibtex  
EASY AND FLEXIBLE BAYESIAN INFERENCE OF QUANTITATIVE GENETIC PARAMETERS. Waldmann, P. Evolution, 63(6): 1640–1643. June 2009.
EASY AND FLEXIBLE BAYESIAN INFERENCE OF QUANTITATIVE GENETIC PARAMETERS [link]Paper   doi   link   bibtex  
Local descriptors of protein structure: A systematic analysis of the sequence-structure relationship in proteins using short- and long-range interactions. Hvidsten, T. R., Kryshtafovych, A., & Fidelis, K. Proteins: Structure, Function, and Bioinformatics, 75(4): 870–884. June 2009.
Local descriptors of protein structure: A systematic analysis of the sequence-structure relationship in proteins using short- and long-range interactions [link]Paper   doi   link   bibtex  
Joint analysis of spatial genetic structure and inbreeding in a managed population of Scots pine. García-Gil, M R, Olivier, F, Kamruzzahan, S, & Waldmann, P Heredity, 103(1): 90–96. July 2009.
Joint analysis of spatial genetic structure and inbreeding in a managed population of Scots pine [link]Paper   doi   link   bibtex  
The Control of Autumn Senescence in European Aspen. Fracheboud, Y., Luquez, V., Björkén, L., Sjödin, A., Tuominen, H., & Jansson, S. Plant Physiology, 149(4): 1982–1991. April 2009.
The Control of Autumn Senescence in European Aspen [link]Paper   doi   link   bibtex   abstract  
Optimum contribution selection in large general tree breeding populations with an application to Scots pine. Hallander, J., & Waldmann, P. Theoretical and Applied Genetics, 118(6): 1133–1142. April 2009.
Optimum contribution selection in large general tree breeding populations with an application to Scots pine [link]Paper   doi   link   bibtex  
Alternative Splicing Studies of the Reactive Oxygen Species Gene Network in Populus Reveal Two Isoforms of High-Isoelectric-Point Superoxide Dismutase. Srivastava, V., Srivastava, M. K., Chibani, K., Nilsson, R., Rouhier, N., Melzer, M., & Wingsle, G. Plant Physiology, 149(4): 1848–1859. April 2009.
Alternative Splicing Studies of the Reactive Oxygen Species Gene Network in <i>Populus</i> Reveal Two Isoforms of High-Isoelectric-Point Superoxide Dismutase [link]Paper   doi   link   bibtex   abstract  
The Role of Lhca Complexes in the Supramolecular Organization of Higher Plant Photosystem I. Wientjes, E., Oostergetel, G. T., Jansson, S., Boekema, E. J., & Croce, R. Journal of Biological Chemistry, 284(12): 7803–7810. March 2009.
The Role of Lhca Complexes in the Supramolecular Organization of Higher Plant Photosystem I [link]Paper   doi   link   bibtex  
A unique program for cell death in xylem fibers of Populus stem. Courtois-Moreau, C. L., Pesquet, E., Sjödin, A., Muñiz, L., Bollhöner, B., Kaneda, M., Samuels, L., Jansson, S., & Tuominen, H. The Plant Journal, 58(2): 260–274. April 2009.
A unique program for cell death in xylem fibers of <i>Populus</i> stem [link]Paper   doi   link   bibtex  
Gibberellin mediates daylength-controlled differentiation of vegetative meristems in strawberry (Fragaria × ananassa Duch). Hytönen, T., Elomaa, P., Moritz, T., & Junttila, O. BMC Plant Biology, 9(1): 18. 2009.
Gibberellin mediates daylength-controlled differentiation of vegetative meristems in strawberry (Fragaria × ananassa Duch) [link]Paper   doi   link   bibtex  
Repression of flowering by the miR172 target SMZ. Mathieu, J., Yant, L. J., Mürdter, F., Küttner, F., & Schmid, M. PLoS biology, 7(7): e1000148. July 2009.
doi   link   bibtex   abstract  
Just say no: floral repressors help Arabidopsis bide the time. Yant, L., Mathieu, J., & Schmid, M. Current Opinion in Plant Biology, 12(5): 580–586. October 2009.
doi   link   bibtex   abstract  
Characterization of Phosphatidylinositol Phosphate Kinases from the Moss Physcomitrella patens: PpPIPK1 and PpPIPK2. Saavedra, L., Balbi, V., Dove, S. K., Hiwatashi, Y., Mikami, K., & Sommarin, M. Plant and Cell Physiology, 50(3): 595–609. January 2009.
Characterization of Phosphatidylinositol Phosphate Kinases from the Moss Physcomitrella patens: PpPIPK1 and PpPIPK2 [link]Paper   doi   link   bibtex  
Deep shade alters the acclimation response to moderate water stress in Quercus suber L. Jimenez, M. D., Pardos, M., Puertolas, J., Kleczkowski, L. A., & Pardos, J. A. Forestry, 82(3): 285–298. July 2009.
Deep shade alters the acclimation response to moderate water stress in Quercus suber L. [link]Paper   doi   link   bibtex  
The Populus Genome Integrative Explorer (PopGenIE): a new resource for exploring the Populus genome. Sjödin, A., Street, N. R., Sandberg, G., Gustafsson, P., & Jansson, S. New Phytologist, 182(4): 1013–1025. June 2009.
The <i>Populus</i> Genome Integrative Explorer (PopGenIE): a new resource for exploring the <i>Populus</i> genome [link]Paper   doi   link   bibtex  
Nitrogen fixation in mixed Hylocomium splendens moss communities. Zackrisson, O., DeLuca, T. H., Gentili, F., Sellstedt, A., & Jäderlund, A. Oecologia, 160(2): 309–319. May 2009.
Nitrogen fixation in mixed Hylocomium splendens moss communities [link]Paper   doi   link   bibtex  
Normalization of qRT-PCR data: the necessity of adopting a systematic, experimental conditions-specific, validation of references. Guenin, S., Mauriat, M., Pelloux, J., Van Wuytswinkel, O., Bellini, C., & Gutierrez, L. Journal of Experimental Botany, 60(2): 487–493. January 2009.
Normalization of qRT-PCR data: the necessity of adopting a systematic, experimental conditions-specific, validation of references [link]Paper   doi   link   bibtex  
Uptake of organic nitrogen by plants. Näsholm, T., Kielland, K., & Ganeteg, U. New Phytologist, 182(1): 31–48. April 2009.
Uptake of organic nitrogen by plants [link]Paper   doi   link   bibtex  
Temperature dependence of respiration in roots colonized by arbuscular mycorrhizal fungi. Atkin, O. K., Sherlock, D., Fitter, A. H., Jarvis, S., Hughes, J. K., Campbell, C., Hurry, V., & Hodge, A. New Phytologist, 182(1): 188–199. April 2009.
Temperature dependence of respiration in roots colonized by arbuscular mycorrhizal fungi [link]Paper   doi   link   bibtex  
Species diversity and regeneration of old-growth seasonally dry Shorea robusta forests following gap formation. Prasad Sapkota, I., Tigabu, M., & Christer Odén, P. Journal of Forestry Research, 20(1): 7–14. February 2009.
Species diversity and regeneration of old-growth seasonally dry Shorea robusta forests following gap formation [link]Paper   doi   link   bibtex  
Improper excess light energy dissipation in Arabidopsis results in a metabolic reprogramming. Frenkel, M., Külheim, C., Jänkänpää, H. J., Skogström, O., Dall'Osto, L., Ågren, J., Bassi, R., Moritz, T., Moen, J., & Jansson, S. BMC Plant Biology, 9(1): 12. January 2009.
Improper excess light energy dissipation in Arabidopsis results in a metabolic reprogramming [link]Paper   doi   link   bibtex   abstract  
Disulphide proteomes and interactions with thioredoxin on the track towards understanding redox regulation in chloroplasts and cyanobacteria. Lindahl, M., & Kieselbach, T. Journal of Proteomics, 72(3): 416–438. April 2009.
Disulphide proteomes and interactions with thioredoxin on the track towards understanding redox regulation in chloroplasts and cyanobacteria [link]Paper   doi   link   bibtex  
Ecophysiological adjustment of two Sphagnum species in response to anthropogenic nitrogen deposition. Wiedermann, M. M., Gunnarsson, U., Ericson, L., & Nordin, A. New Phytologist, 181(1): 208–217. January 2009.
Ecophysiological adjustment of two <i>Sphagnum</i> species in response to anthropogenic nitrogen deposition [link]Paper   doi   link   bibtex  
Antisense Inhibition of the PsbX Protein Affects PSII Integrity in the Higher Plant Arabidopsis thaliana. García-Cerdán, J. G., Sveshnikov, D., Dewez, D., Jansson, S., Funk, C., & Schröder, W. P. Plant and Cell Physiology, 50(2): 191–202. February 2009.
Antisense Inhibition of the PsbX Protein Affects PSII Integrity in the Higher Plant Arabidopsis thaliana [link]Paper   doi   link   bibtex  
Gene expression trends and protein features effectively complement each other in gene function prediction. Wabnik, K., Hvidsten, T. R., Kedzierska, A., Van Leene, J., De Jaeger, G., Beemster, G. T. S., Komorowski, J., & Kuiper, M. T. R. Bioinformatics, 25(3): 322–330. February 2009.
Gene expression trends and protein features effectively complement each other in gene function prediction [link]Paper   doi   link   bibtex  
Chlorophyll limitation in plants remodels and balances the photosynthetic apparatus by changing the accumulation of photosystems I and II through two different approaches. Hansson, A., & Jensen, P. E. Physiologia Plantarum, 135(2): 214–228. February 2009.
Chlorophyll limitation in plants remodels and balances the photosynthetic apparatus by changing the accumulation of photosystems I and II through two different approaches [link]Paper   doi   link   bibtex  
Unlocking Interpretation in Near Infrared Multivariate Calibrations by Orthogonal Partial Least Squares. Stenlund, H., Johansson, E., Gottfries, J., & Trygg, J. Analytical Chemistry, 81(1): 203–209. January 2009.
Unlocking Interpretation in Near Infrared Multivariate Calibrations by Orthogonal Partial Least Squares [link]Paper   doi   link   bibtex  
Integrated Analysis of Transcript, Protein and Metabolite Data To Study Lignin Biosynthesis in Hybrid Aspen. Bylesjö, M., Nilsson, R., Srivastava, V., Grönlund, A., Johansson, A. I., Jansson, S., Karlsson, J., Moritz, T., Wingsle, G., & Trygg, J. Journal of Proteome Research, 8(1): 199–210. January 2009.
Integrated Analysis of Transcript, Protein and Metabolite Data To Study Lignin Biosynthesis in Hybrid Aspen [link]Paper   doi   link   bibtex  
Unequal deployment of clones to seed orchards by considering genetic gain, relatedness and gene diversity. Lindgren, D., Danusevicius, D., & Rosvall, O. Forestry, 82(1): 17–28. January 2009.
Unequal deployment of clones to seed orchards by considering genetic gain, relatedness and gene diversity [link]Paper   doi   link   bibtex  
Bioinformatic Strategies for cDNA-Microarray Data Processing. Fahln, J., Landfors, M., Freyhult, E., Bylesj, M., Trygg, J., Hvidsten, T. R, & Rydn, P. In Scherer, A., editor(s), Batch Effects and Noise in Microarray Experiments, pages 61–74. John Wiley & Sons, Ltd, Chichester, UK, October 2009.
Bioinformatic Strategies for cDNA-Microarray Data Processing [link]Paper   doi   link   bibtex   abstract  
Large scale geographic clines of parasite damage to Populus tremula L. Albrectsen, B. R., Witzell, J., Robinson, K. M., Wulff, S., Luquez, V. M. C., Ågren, R., & Jansson, S. Ecography. October 2009.
Large scale geographic clines of parasite damage to <i>Populus tremula</i> L [link]Paper   doi   link   bibtex